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4PJO

Minimal u1 snrnp

PDB DOI: 10.2210/pdb4pjo/pdb

Classification: SPLICING
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2014-05-12
Deposition Author(s): Kondo, Y. , Nagai, K. , Oubridge, C. , Van Roon, A.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.3 Å

Literature

Minimal u1 snrnp

Kondo, Y. , Nagai, K. , Oubridge, C. , Van Roon, A.M.

Primary Citation of Related Structures: 4PJO


Proteins
Molecule Chains Sequence Length Organism Sequence
Small nuclear ribonucleoprotein Sm D3 A 126 Homo Sapiens , Synthetic Construct MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGRGMGRGNIFQKRR
Small nuclear ribonucleoprotein Sm D3 O 126 Homo Sapiens , Synthetic Construct MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGRGMGRGNIFQKRR
Small nuclear ribonucleoprotein-associated proteins B and B' B 95 Homo Sapiens , Synthetic Construct MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARV
Small nuclear ribonucleoprotein-associated proteins B and B' P 95 Homo Sapiens , Synthetic Construct MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARV
Small nuclear ribonucleoprotein Sm D1 C 91 Homo Sapiens , Synthetic Construct GSGSGSVKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEP
Small nuclear ribonucleoprotein Sm D1 Q 91 Homo Sapiens , Synthetic Construct GSGSGSVKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEP
Small nuclear ribonucleoprotein Sm D2 D 118 Homo Sapiens , Synthetic Construct MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK
Small nuclear ribonucleoprotein Sm D2 R 118 Homo Sapiens , Synthetic Construct MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLIAGK
Small nuclear ribonucleoprotein E E 92 Homo Sapiens , Synthetic Construct MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVSN
Small nuclear ribonucleoprotein E S 92 Homo Sapiens , Synthetic Construct MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVSN
Small nuclear ribonucleoprotein F F 75 Homo Sapiens , Synthetic Construct MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV
Small nuclear ribonucleoprotein F T 75 Homo Sapiens , Synthetic Construct MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV
Small nuclear ribonucleoprotein G G 76 Homo Sapiens , Synthetic Construct MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV
Small nuclear ribonucleoprotein G U 76 Homo Sapiens , Synthetic Construct MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV
U1 small nuclear ribonucleoprotein 70 kDa K 60 Homo Sapiens , Synthetic Construct GTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA
U1 small nuclear ribonucleoprotein 70 kDa N 60 Homo Sapiens , Synthetic Construct GTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA
U1 small nuclear ribonucleoprotein C L 61 Homo Sapiens , Synthetic Construct MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGK
U1 small nuclear ribonucleoprotein C M 61 Homo Sapiens , Synthetic Construct MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
U1 RNA variant (48-MER) with 4-helix junction replaced by kissing loop (HIV-1 (Mal) DIS) and shorter stem-loop 4. 1 60 NA GGACUUACCUGGCAGUGAGGUGCACACACUGCAUAAUUUGUGGUAGUGGGCGAAAGCCCG
U1 RNA variant (48-MER) with 4-helix junction replaced by kissing loop (HIV-1 (Mal) DIS) and shorter stem-loop 4. 2 60 NA GGACUUACCUGGCAGUGAGGUGCACACACUGCAUAAUUUGUGGUAGUGGGCGAAAGCCCG
U1 RNA variant (48-MER) with 4-helix junction replaced by kissing loop (HIV-1 (Mal) DIS) and shorter stem-loop 4. 3 60 NA GGACUUACCUGGCAGUGAGGUGCACACACUGCAUAAUUUGUGGUAGUGGGCGAAAGCCCG
U1 RNA variant (48-MER) with 4-helix junction replaced by kissing loop (HIV-1 (Mal) DIS) and shorter stem-loop 4. 4 60 NA GGACUUACCUGGCAGUGAGGUGCACACACUGCAUAAUUUGUGGUAGUGGGCGAAAGCCCG
RNA (5'-R(*AP*GP*GP*UP*AP*AP*GP*UP*CP*C)-3') x 10 NA AGGUAAGUCC
RNA (5'-R(*AP*GP*GP*UP*AP*AP*GP*UP*CP*C)-3') y 10 NA AGGUAAGUCC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2014-05-12
Deposition Author(s): Kondo, Y. , Nagai, K. , Oubridge, C. , Van Roon, A.M.