4PBU
Serial time-resolved crystallography of photosystem ii using a femtosecond x-ray laser the s1 state
PDB DOI: 10.2210/pdb4pbu/pdb
Classification: PHOTOSYNTHESIS Organism(s): Thermosynechococcus Elongatus
Deposited: 2014-04-13 Deposition Author(s): Aquila, A. , Bari, S. , Barty, A. , Basu, S. , Bergkamp, J.J. , Beyerlein, K. , Bogan, M.J. , Boutet, S. , Caleman, C. , Chao, T.-C. , Chapman, H.N. , Cobb, D.E. , Conrad, C.E. , Davis, K.M. , Deponte, D. , Doak, R.B. , Fleckenstein, H. , Frank, M. , Fromme, P. , Fromme, R. , Galli, L. , Grotjohann, I. , Hau-Riege, S.P. , Hunter, M. , James, D. , Kassemeyer, S. , Kirian, R.A. , Kupitz, C. , Laksmono, H. , Liang, M. , Liu, H. , Lomb, L. , Marchesini, S. , Martin, A.V. , Messerschmidt, M. , Milathianaki, D. , Moore, A.L. , Moore, T.A. , Nass, K. , Pushkar, Y. , Reeder, B. , Rendek, K.N. , Ros, A. , Roy-Chowdhury, S. , Schmidt, K. , Seibert, M. , Shoeman, R.L. , Sierra, R.G. , Spence, J.C.H. , Steinbrener, J. , Stellato, F. , Wang, D. , Weierstall, U. , White, T.A. , Williams, G.J. , Yan, L. , Yang, J.H. , Yoon, C. , Zatsepin, N.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 5 Å
Serial time-resolved crystallography of photosystem ii using a femtosecond x-ray laser the s1 state
Aquila, A. , Bari, S. , Barty, A. , Basu, S. , Bergkamp, J.J. , Beyerlein, K. , Bogan, M.J. , Boutet, S. , Caleman, C. , Chao, T.-C. , Chapman, H.N. , Cobb, D.E. , Conrad, C.E. , Davis, K.M. , Deponte, D. , Doak, R.B. , Fleckenstein, H. , Frank, M. , Fromme, P. , Fromme, R. , Galli, L. , Grotjohann, I. , Hau-Riege, S.P. , Hunter, M. , James, D. , Kassemeyer, S. , Kirian, R.A. , Kupitz, C. , Laksmono, H. , Liang, M. , Liu, H. , Lomb, L. , Marchesini, S. , Martin, A.V. , Messerschmidt, M. , Milathianaki, D. , Moore, A.L. , Moore, T.A. , Nass, K. , Pushkar, Y. , Reeder, B. , Rendek, K.N. , Ros, A. , Roy-Chowdhury, S. , Schmidt, K. , Seibert, M. , Shoeman, R.L. , Sierra, R.G. , Spence, J.C.H. , Steinbrener, J. , Stellato, F. , Wang, D. , Weierstall, U. , White, T.A. , Williams, G.J. , Yan, L. , Yang, J.H. , Yoon, C. , Zatsepin, N.
Primary Citation of Related Structures: 4PBU
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem Q(B) protein 1 | A | 334 | Thermosynechococcus Elongatus | ANLWERFCNWVTSTDNRLYVGWFGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLGMRPWICVAYSAPLASAFAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHQLGVAGVFGGALFCAMHGSLVTSSLIRETTETESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGVWFAALGISTMAFNLNGFNFNHSVIDAKGNVINTWADIINRANLGMEVMHERNAHNFPLDLA |
| Photosystem II reaction center protein K | K | 37 | Thermosynechococcus Elongatus | KLPEAYAIFDPLVDVLPVIPVLFLALAFVWQAAVGFR |
| Photosystem II reaction center protein L | L | 37 | Thermosynechococcus Elongatus | MEPNPNRQPVELNRTSLYLGLLLILVLALLFSSYFFN |
| Photosystem II reaction center protein M | M | 34 | Thermosynechococcus Elongatus | MEVNQLGLIATALFVLVPSVFLIILYVQTESQQK |
| Photosystem II manganese-stabilizing polypeptide | O | 243 | Thermosynechococcus Elongatus | TLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKNLVASTQPNVTSITTSTDFKGEFNVPSYRTANFLDPKGRGLASGYDSAIALPQAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAHEPHEVKIQGVFYASIEPA |
| Photosystem II reaction center protein T | T | 30 | Thermosynechococcus Elongatus | METITYVFIFACIIALFFFAIFFREPPRIT |
| Photosystem II 12 kDa extrinsic protein | U | 97 | Thermosynechococcus Elongatus | ELVNVVDEKLGTAYGEKIDLNNTNIAAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVTEVETALVEGGDRYNNGLYK |
| Cytochrome c-550 | V | 137 | Thermosynechococcus Elongatus | AELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGGITKTNPSLDLRTETLALATPPRDNIEGLVDYMKNPTTYDGEQEIAEVHPSLRSADIFPKMRNLTEKDLVAIAGHILVEPKILGDKWGGGKVYY |
| Photosystem II reaction center protein Ycf12 | Y | 29 | Thermosynechococcus Elongatus | VIAQLTMIAMIGIAGPMIIFLLAVRRGNL |
| Photosystem II reaction center X protein | X | 39 | Thermosynechococcus Elongatus | TITPSLKGFFIGLLSGAVVLGLTFAVLIAISQIDKVQRS |
| Photosystem II reaction center protein Z | Z | 62 | Thermosynechococcus Elongatus | MTILFQLALAALVILSFVMVIGVPVAYASPQDWDRSKQLIFLGSGLWIALVLVVGVLNFFVV |
| Photosystem II core light harvesting protein | B | 504 | Thermosynechococcus Elongatus | GLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPVLNPMWRQGMFVLPFMARLGVTGSWSGWSITGETGIDPGFWSFEGVALAHIVLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCFGFGAFHLTGLFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAHHIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEAWSAIPEKLAFYDYIGNNPAKGGLFRTGPMNKGDGIAQAWKGHAVFRNKEGEELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSFYGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWFTFAHAVFALLFFFGHIWHGARTLFRDVFSGIDPELSPEQVEWGFYQKVGDVTTR |
| Photosystem II CP43 protein | C | 455 | Thermosynechococcus Elongatus | NSIFATNRDQESSGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFELAHFIPEKPMYEQGLILIPHIATLGWGVGPGGEVVDTFPFFVVGVVHLISSAVLGFGGVYHAIRGPETLEEYSSFFGYDWKDKNKMTTILGFHLIVLGIGALLLVAKAMFFGGLYDTWAPGGGDVRVITNPTLDPRVIFGYLLKSPFGGEGWIVSVNNLEDVVGGHIWIGLICIAGGIWHILTTPFGWARRAFIWSGEAYLSYSLGALSMMGFIATCFVWFNNTVYPSEFYGPTGPEASQAQAMTFLIRDQKLGANVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNFVSPRSWLATSHFVLAFFFLVGHLWHAGRARAAAAGFEKGIDRESEPVLSMPSLD |
| Photosystem II D2 protein | D | 342 | Thermosynechococcus Elongatus | ERGWFDILDDWLKRDRFVFVGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPHENFVFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 81 | Thermosynechococcus Elongatus | TTGERPFSDIITSVRYWVIHSITIPALFIAGWLFVSTGLAYDVFGTPRPDSYYAQEQRSIPLVTDRFEAKQQVETFLEQLK |
| Cytochrome b559 subunit beta | F | 34 | Thermosynechococcus Elongatus | SYPIFTVRWVAVHTLAVPTIFFLGAIAAMQFIQR |
| Photosystem II reaction center protein H | H | 65 | Thermosynechococcus Elongatus | ARRTWLGDILRPLNSEYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLILDGVNVSWKALG |
| Photosystem II reaction center protein I | I | 38 | Thermosynechococcus Elongatus | METLKITVYIVVTFFVLLFVFGFLSGDPARNPKRKDLE |
| Photosystem II reaction center protein J | J | 40 | Thermosynechococcus Elongatus | MMSEGGRIPLWIVATVAGMGVIVIVGLFFYGAYAGLGSSL |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2014-04-13 Deposition Author(s): Aquila, A. , Bari, S. , Barty, A. , Basu, S. , Bergkamp, J.J. , Beyerlein, K. , Bogan, M.J. , Boutet, S. , Caleman, C. , Chao, T.-C. , Chapman, H.N. , Cobb, D.E. , Conrad, C.E. , Davis, K.M. , Deponte, D. , Doak, R.B. , Fleckenstein, H. , Frank, M. , Fromme, P. , Fromme, R. , Galli, L. , Grotjohann, I. , Hau-Riege, S.P. , Hunter, M. , James, D. , Kassemeyer, S. , Kirian, R.A. , Kupitz, C. , Laksmono, H. , Liang, M. , Liu, H. , Lomb, L. , Marchesini, S. , Martin, A.V. , Messerschmidt, M. , Milathianaki, D. , Moore, A.L. , Moore, T.A. , Nass, K. , Pushkar, Y. , Reeder, B. , Rendek, K.N. , Ros, A. , Roy-Chowdhury, S. , Schmidt, K. , Seibert, M. , Shoeman, R.L. , Sierra, R.G. , Spence, J.C.H. , Steinbrener, J. , Stellato, F. , Wang, D. , Weierstall, U. , White, T.A. , Williams, G.J. , Yan, L. , Yang, J.H. , Yoon, C. , Zatsepin, N.