4MKY
Polymerase domain from mycobacterium tuberculosis ligase d in complex with an annealed double-strand dna break.
PDB DOI: 10.2210/pdb4mky/pdb
Classification: TRANSFERASE/DNA Organism(s): Mycobacterium Tuberculosis , Synthetic Construct
Deposited: 2013-09-05 Deposition Author(s): Brissett, N.C. , Doherty, A.J.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.4 Å
Polymerase domain from mycobacterium tuberculosis ligase d in complex with an annealed double-strand dna break.
Brissett, N.C. , Doherty, A.J.
Primary Citation of Related Structures: 4MKY
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA ligase-like protein Rv0938/MT0965 | A | 303 | Mycobacterium Tuberculosis , Synthetic Construct | GSHMGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY |
| DNA ligase-like protein Rv0938/MT0965 | B | 303 | Mycobacterium Tuberculosis , Synthetic Construct | GSHMGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY |
| DNA ligase-like protein Rv0938/MT0965 | C | 303 | Mycobacterium Tuberculosis , Synthetic Construct | GSHMGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY |
| DNA ligase-like protein Rv0938/MT0965 | D | 303 | Mycobacterium Tuberculosis , Synthetic Construct | GSHMGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRY |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5'-D(P*DGP*DCP*DGP*DGP*DC)-3' | e | 5 | NA | GCGGC |
| 5'-D(P*DGP*DCP*DGP*DGP*DC)-3' | g | 5 | NA | GCGGC |
| 5'-D(P*DGP*DCP*DGP*DGP*DC)-3' | i | 5 | NA | GCGGC |
| 5'-D(P*DGP*DCP*DGP*DGP*DC)-3' | k | 5 | NA | GCGGC |
| 5'-D(*DGP*DCP*DCP*DGP*DCP*DAP*DGP*DTP*DAP*DC)-3' | f | 10 | NA | GCCGCAGTAC |
| 5'-D(*DGP*DCP*DCP*DGP*DCP*DAP*DGP*DTP*DAP*DC)-3' | h | 10 | NA | GCCGCAGTAC |
| 5'-D(*DGP*DCP*DCP*DGP*DCP*DAP*DGP*DTP*DAP*DC)-3' | j | 10 | NA | GCCGCAGTAC |
| 5'-D(*DGP*DCP*DCP*DGP*DCP*DAP*DGP*DTP*DAP*DC)-3' | l | 10 | NA | GCCGCAGTAC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2013-09-05 Deposition Author(s): Brissett, N.C. , Doherty, A.J.