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4M6D
Crystal structure of the aptamer minf-lysozyme complex.
PDB DOI: 10.2210/pdb4m6d/pdb
Classification: Hydrolase/RNA Organism(s): Caldanaerobius , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2013-08-09 Deposition Author(s): Almo, S.C. , Girvin, M. , Malashkevich, V.N. , New York Structural Genomics Research Consortium (Nysgrc) , Padlan, F.C. , Toro, R.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.68 Å
Crystal structure of the aptamer minf-lysozyme complex.
Almo, S.C. , Girvin, M. , Malashkevich, V.N. , New York Structural Genomics Research Consortium (Nysgrc) , Padlan, F.C. , Toro, R.
Primary Citation of Related Structures: 4M6D
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Lysozyme C | A | 129 | Caldanaerobius , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL |
| Lysozyme C | C | 129 | Caldanaerobius , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL |
| Lysozyme C | E | 129 | Caldanaerobius , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL |
| Lysozyme C | G | 129 | Caldanaerobius , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL |
| Lysozyme C | I | 129 | Caldanaerobius , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL |
| Lysozyme C | K | 129 | Caldanaerobius , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| aptamer | b | 45 | NA | GGGCGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACGCCC |
| aptamer | d | 45 | NA | GGGCGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACGCCC |
| aptamer | f | 45 | NA | GGGCGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACGCCC |
| aptamer | h | 45 | NA | GGGCGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACGCCC |
| aptamer | j | 45 | NA | GGGCGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACGCCC |
| aptamer | l | 45 | NA | GGGCGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACGCCC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2013-08-09 Deposition Author(s): Almo, S.C. , Girvin, M. , Malashkevich, V.N. , New York Structural Genomics Research Consortium (Nysgrc) , Padlan, F.C. , Toro, R.