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FASTA Sequence PDB Format mmCIF Format
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4LAJ

Crystal structure of hiv-1 yu2 envelope gp120 glycoprotein in complex with cd4-mimetic miniprotein, m48u1, and llama single-domain, broadly neutralizing, co-receptor binding site antibody, jm4

PDB DOI: 10.2210/pdb4laj/pdb

Classification: VIRAL PROTEIN/INHIBITOR
Organism(s): Human Immunodeficiency Virus 1 , Lama Glama , Synthetic Construct

Deposited: 2013-06-20
Deposition Author(s): Acharya, P. , Kwong, P.D. , Luongo, T.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.14 Å

4laj
Literature

Crystal structure of hiv-1 yu2 envelope gp120 glycoprotein in complex with cd4-mimetic miniprotein, m48u1, and llama single-domain, broadly neutralizing, co-receptor binding site antibody, jm4

Acharya, P. , Kwong, P.D. , Luongo, T.S.

Primary Citation of Related Structures: 4LAJ


Proteins
Molecule Chains Sequence Length Organism Sequence
HIV-1 YU2 gp120 envelope glycoprotein J 376 Human Immunodeficiency Virus 1 , Lama Glama , Synthetic Construct MPMGSLQPLATLYLLGMLVASVLAVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVKLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTGGSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNNGGSGSGGDIRQAHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDTRKLNNTGRNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIE
HIV-1 YU2 gp120 envelope glycoprotein F 376 Human Immunodeficiency Virus 1 , Lama Glama , Synthetic Construct MPMGSLQPLATLYLLGMLVASVLAVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVKLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTGGSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNNGGSGSGGDIRQAHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDTRKLNNTGRNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIE
HIV-1 YU2 gp120 envelope glycoprotein A 376 Human Immunodeficiency Virus 1 , Lama Glama , Synthetic Construct MPMGSLQPLATLYLLGMLVASVLAVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVKLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTGGSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNNGGSGSGGDIRQAHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDTRKLNNTGRNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIE
HIV-1 YU2 gp120 envelope glycoprotein B 376 Human Immunodeficiency Virus 1 , Lama Glama , Synthetic Construct MPMGSLQPLATLYLLGMLVASVLAVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVKLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTGGSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNESVVINCTRPNNGGSGSGGDIRQAHCNLSKTQWENTLEQIAIKLKEQFGNNKTIIFNPSSGGDPEIVTHSFNCGGEFFYCNSTQLFTWNDTRKLNNTGRNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKDTNGTEIFRPGGGDMRDNWRSELYKYKVVKIE
CD4-mimetic miniprotein M48U1 K 28 Human Immunodeficiency Virus 1 , Lama Glama , Synthetic Construct XNLHFCQLRCKSLGLLGRCAPTXCACVX
CD4-mimetic miniprotein M48U1 D 28 Human Immunodeficiency Virus 1 , Lama Glama , Synthetic Construct XNLHFCQLRCKSLGLLGRCAPTXCACVX
CD4-mimetic miniprotein M48U1 G 28 Human Immunodeficiency Virus 1 , Lama Glama , Synthetic Construct XNLHFCQLRCKSLGLLGRCAPTXCACVX
CD4-mimetic miniprotein M48U1 C 28 Human Immunodeficiency Virus 1 , Lama Glama , Synthetic Construct XNLHFCQLRCKSLGLLGRCAPTXCACVX
Llama single domain antibody, JM4 H 129 Human Immunodeficiency Virus 1 , Lama Glama , Synthetic Construct EVQLVESGGGLVQPGGSLRLSCAASGFTLDYYSIGWFRQAPGKEREGVSCISDSDGRTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCATDCTVDPSLLYVMDYYGKGTQVTVSSAAAEQK
Llama single domain antibody, JM4 M 129 Human Immunodeficiency Virus 1 , Lama Glama , Synthetic Construct EVQLVESGGGLVQPGGSLRLSCAASGFTLDYYSIGWFRQAPGKEREGVSCISDSDGRTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCATDCTVDPSLLYVMDYYGKGTQVTVSSAAAEQK
Llama single domain antibody, JM4 L 129 Human Immunodeficiency Virus 1 , Lama Glama , Synthetic Construct EVQLVESGGGLVQPGGSLRLSCAASGFTLDYYSIGWFRQAPGKEREGVSCISDSDGRTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCATDCTVDPSLLYVMDYYGKGTQVTVSSAAAEQK
Llama single domain antibody, JM4 I 129 Human Immunodeficiency Virus 1 , Lama Glama , Synthetic Construct EVQLVESGGGLVQPGGSLRLSCAASGFTLDYYSIGWFRQAPGKEREGVSCISDSDGRTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCATDCTVDPSLLYVMDYYGKGTQVTVSSAAAEQK
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2013-06-20
Deposition Author(s): Acharya, P. , Kwong, P.D. , Luongo, T.S.