4KZD
Crystal structure of an rna aptamer in complex with fluorophore and fab
PDB DOI: 10.2210/pdb4kzd/pdb
Classification: immune system/rna Organism(s): Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2013-05-29 Deposition Author(s): Huang, H. , Koldobskaya, Y. , Li, N. , Piccirilli, J.A. , Rice, P.A. , Suslov, N.B.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.186 Å
Crystal structure of an rna aptamer in complex with fluorophore and fab
Huang, H. , Koldobskaya, Y. , Li, N. , Piccirilli, J.A. , Rice, P.A. , Suslov, N.B.
Primary Citation of Related Structures: 4KZD
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| BL3-6 Fab antibody, heavy chain | H | 232 | Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | EISEVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARQGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTH |
| BL3-6 Fab antibody, light chain | L | 215 | Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQSYSFPSTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA (84-MER) | r | 84 | NA | GGACGCGACCGAAAUGGUGAAGGACGGGUCCAGUGCGAAACACGCACUGUUGAGUAGAGUGUGAGCUCCGUAACUGGUCGCGUC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2013-05-29 Deposition Author(s): Huang, H. , Koldobskaya, Y. , Li, N. , Piccirilli, J.A. , Rice, P.A. , Suslov, N.B.