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FASTA Sequence PDB Format mmCIF Format
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4KPY

Dna binding protein and dna complex structure

PDB DOI: 10.2210/pdb4kpy/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Thermus Thermophilus , Synthetic Construct

Deposited: 2013-05-14
Deposition Author(s): Rao, Y. , Sheng, G. , Wang, J. , Wang, Y. , Zhao, H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.406 Å

4kpy
Literature

Dna binding protein and dna complex structure

Rao, Y. , Sheng, G. , Wang, J. , Wang, Y. , Zhao, H.

Primary Citation of Related Structures: 4KPY


Proteins
Molecule Chains Sequence Length Organism Sequence
Uncharacterized protein A 685 Thermus Thermophilus , Synthetic Construct MNHLGKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYPLLAQVARRAGGVTVRMGDGLASWSPPEVLVLEGTLARMGQTYAYRLYPKGRRPLDPKDPGERSVLSALARRLLQERLRRLEGVWVEGLAVYRREHARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRILCEMSLEAWLAQGHPLPKRVRNAYDRRTWELLRLGEEDPKELPLPGGLSLLDYHASKGRLQGREGGRVAWVADPKDPRKPIPHLTGLLVPVLTLEDLHEEEGSLALSLPWEERRRRTREIASWIGRRLGLGTPEAVRAQAYRLSIPKLMGRRAVSKPADALRVGFYRAQETALALLRLDGAQGWPEFLRRALLRAFGASGASLRLHTLHAHPSQGLAFREALRKAKEEGVQAVLVLTPPMAWEDRNRLKALLLREGLPSQILNVPLREEERHRWENALLGLLAKAGLQVVALSGAYPAELAVGFDAGGRESFRFGGAACAVGGDGGHLLWTLPEAQAGERIPQEVVWDLLEETLWAFRRKAGRLPSRVLLLRDGRVPQDEFALALEALAREGIAYDLVSVRKSGGGRVYPVQGRLADGLYVPLEDKTFLLLTVHRDFRGTPRPLKLVHEAGDTPLEALAHQIFHLTRLYPASGFAFPRLPAPLHLADRLVKEVGRLGIRHLKEVDREKLFFV
Uncharacterized protein B 685 Thermus Thermophilus , Synthetic Construct MNHLGKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYPLLAQVARRAGGVTVRMGDGLASWSPPEVLVLEGTLARMGQTYAYRLYPKGRRPLDPKDPGERSVLSALARRLLQERLRRLEGVWVEGLAVYRREHARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRILCEMSLEAWLAQGHPLPKRVRNAYDRRTWELLRLGEEDPKELPLPGGLSLLDYHASKGRLQGREGGRVAWVADPKDPRKPIPHLTGLLVPVLTLEDLHEEEGSLALSLPWEERRRRTREIASWIGRRLGLGTPEAVRAQAYRLSIPKLMGRRAVSKPADALRVGFYRAQETALALLRLDGAQGWPEFLRRALLRAFGASGASLRLHTLHAHPSQGLAFREALRKAKEEGVQAVLVLTPPMAWEDRNRLKALLLREGLPSQILNVPLREEERHRWENALLGLLAKAGLQVVALSGAYPAELAVGFDAGGRESFRFGGAACAVGGDGGHLLWTLPEAQAGERIPQEVVWDLLEETLWAFRRKAGRLPSRVLLLRDGRVPQDEFALALEALAREGIAYDLVSVRKSGGGRVYPVQGRLADGLYVPLEDKTFLLLTVHRDFRGTPRPLKLVHEAGDTPLEALAHQIFHLTRLYPASGFAFPRLPAPLHLADRLVKEVGRLGIRHLKEVDREKLFFV

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*AP*GP*T)-3') c 21 NA TGAGGTAGTAGGTTGTATAGT
DNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*AP*GP*T)-3') e 21 NA TGAGGTAGTAGGTTGTATAGT
DNA (5'-D(P*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3') d 10 NA TACTACCTCG
DNA (5'-D(P*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3') f 10 NA TACTACCTCG
DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*CP*C)-3') m 9 NA TATACAACC
DNA (5'-D(*TP*AP*TP*AP*CP*AP*AP*CP*C)-3') n 9 NA TATACAACC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2013-05-14
Deposition Author(s): Rao, Y. , Sheng, G. , Wang, J. , Wang, Y. , Zhao, H.