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FASTA Sequence PDB Format mmCIF Format
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4K8Z

Kod polymerase in binary complex with dsdna

PDB DOI: 10.2210/pdb4k8z/pdb

Classification: TRANSFERASE/DNA
Organism(s): Thermococcus Kodakarensis , Synthetic Construct

Deposited: 2013-04-19
Deposition Author(s): Bergen, K. , Betz, K. , Diederichs, K. , Marx, A. , Welte, W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.29 Å

4k8z
Literature

Kod polymerase in binary complex with dsdna

Bergen, K. , Betz, K. , Diederichs, K. , Marx, A. , Welte, W.

Primary Citation of Related Structures: 4K8Z


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase A 774 Thermococcus Kodakarensis , Synthetic Construct MILDTDYITEDGKPVIRIFKKENGEFKIEYDRTFEPYFYALLKDDSAIEEVKKITAERHGTVVTVKRVEKVQKKFLGRPVEVWKLYFTHPQDVPAIRDKIREHPAVIDIYEYDIPFAKRYLIDKGLVPMEGDEELKMLAFAIATLYHEGEEFAEGPILMISYADEEGARVITWKNVDLPYVDVVSTEREMIKRFLRVVKEKDPDVLITYNGDNFDFAYLKKRCEKLGINFALGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGQPKEKVYAEEITTAWETGENLERVARYSMEDAKVTYELGKEFLPMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAYERNELAPNKPDEKELARRRQSYEGGYVKEPERGLWENIVYLDFRSLYPSIIITHNVSPDTLNREGCKEYDVAPQVGHRFCKDFPGFIPSLLGDLLEERQKIKKKMKATIDPIERKLLDYRQRAIKILANSYYGYYGYARARWYCKECAESVTAWGREYITMTIKEIEEKYGFKVIYSDTDGFFATIPGADAETVKKKAMEFLKYINAKLPGALELEYEGFYKRGFFVTKKKYAVIDEEGKITTRGLEIVRRDWSEIAKETQARVLEALLKDGDVEKAVRIVKEVTEKLSKYEVPPEKLVIHEQITRDLKDYKATGPHVAVAKRLAARGVKIRPGTVISYIVLKGSGRIGDRAIPFDEFDPTKHKYDAEYYIENQVLPAVERILRAFGYRKEDLRYQKTRQVGLSAWLKPKGT

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*AP*AP*AP*TP*TP*CP*GP*CP*AP*GP*TP*TP*CP*GP*CP*G)-3') t 16 NA AAATTCGCAGTTCGCG
DNA (5'-D(*CP*GP*CP*GP*AP*AP*CP*TP*GP*CP*GP*(2DA))-3') p 12 NA CGCGAACTGCGA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2013-04-19
Deposition Author(s): Bergen, K. , Betz, K. , Diederichs, K. , Marx, A. , Welte, W.