4JPK
Crystal structure of the germline-targeting hiv-1 gp120 engineered outer domain eod-gt6 in complex with a putative vrc01 germline precursor fab
PDB DOI: 10.2210/pdb4jpk/pdb
Classification: IMMUNE SYSTEM/VIRAL PROTEIN Organism(s): Salmonella Enterica , Anoxybacillus Sp. Lm18-11
Deposited: 2013-03-19 Deposition Author(s): Jardine, J. , Julien, J.-P. , Schief, W.R. , Wilson, I.A.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.4 Å
Crystal structure of the germline-targeting hiv-1 gp120 engineered outer domain eod-gt6 in complex with a putative vrc01 germline precursor fab
Jardine, J. , Julien, J.-P. , Schief, W.R. , Wilson, I.A.
Primary Citation of Related Structures: 4JPK
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Putative VRC01 germline precursor Fab heavy chain | H | 248 | Salmonella Enterica , Anoxybacillus Sp. Lm18-11 | QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARGKNSDYNWDFQHWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTKLGGSGGHHHHHHGGSGHG |
| Putative VRC01 germline precursor Fab light chain | L | 210 | Salmonella Enterica , Anoxybacillus Sp. Lm18-11 | EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQYEFFGQGTKLEIKRSTVAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| Germline-targeting HIV-1 gp120 engineered outer domain, eOD-GT6 | A | 172 | Salmonella Enterica , Anoxybacillus Sp. Lm18-11 | DTITLPCRPAPPPHCSSNITGLILTRDGGVSNDETEIFRPSGGDMRDIARCQIAGTVVSTQLFLNGSLAEEEVVIRSVDFRDNAKSICVQLATSVEIACTGAGHCAISRAKWANTLKQIASKLREQFGARTIIFKQSSGGDPEFVTHSFNCGGEFFYCDSTQLFASTWFAST |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2013-03-19 Deposition Author(s): Jardine, J. , Julien, J.-P. , Schief, W.R. , Wilson, I.A.