4IEM
Human apurinic/apyrimidinic endonuclease (ape1) with product dna and mg2+
PDB DOI: 10.2210/pdb4iem/pdb
Classification: HYDROLASE, LYASE/DNA Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2012-12-13 Deposition Author(s): Arvai, A.S. , Mol, C.D. , Tainer, J.A. , Tsutakawa, S.E.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.3936 Å
Human apurinic/apyrimidinic endonuclease (ape1) with product dna and mg2+
Arvai, A.S. , Mol, C.D. , Tainer, J.A. , Tsutakawa, S.E.
Primary Citation of Related Structures: 4IEM
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA-(apurinic or apyrimidinic site) lyase | A | 317 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | PKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL |
| DNA-(apurinic or apyrimidinic site) lyase | B | 317 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | PKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL |
| DNA-(apurinic or apyrimidinic site) lyase | C | 317 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | PKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL |
| DNA-(apurinic or apyrimidinic site) lyase | D | 317 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | PKRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKPATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKALGSDHCPITLYLAL |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(*GP*CP*TP*AP*C)-3') | e | 5 | NA | GCTAC |
| DNA (5'-D(*GP*CP*TP*AP*C)-3') | h | 5 | NA | GCTAC |
| DNA (5'-D(*GP*CP*TP*AP*C)-3') | k | 5 | NA | GCTAC |
| DNA (5'-D(*GP*CP*TP*AP*C)-3') | n | 5 | NA | GCTAC |
| DNA (5'-D(P*(3DR)P*GP*AP*TP*CP*G)-3') | f | 6 | NA | NGATCG |
| DNA (5'-D(P*(3DR)P*GP*AP*TP*CP*G)-3') | i | 6 | NA | NGATCG |
| DNA (5'-D(P*(3DR)P*GP*AP*TP*CP*G)-3') | l | 6 | NA | NGATCG |
| DNA (5'-D(P*(3DR)P*GP*AP*TP*CP*G)-3') | o | 6 | NA | NGATCG |
| DNA (5'-D(*CP*GP*AP*TP*CP*GP*GP*TP*AP*GP*C)-3') | g | 11 | NA | CGATCGGTAGC |
| DNA (5'-D(*CP*GP*AP*TP*CP*GP*GP*TP*AP*GP*C)-3') | j | 11 | NA | CGATCGGTAGC |
| DNA (5'-D(*CP*GP*AP*TP*CP*GP*GP*TP*AP*GP*C)-3') | m | 11 | NA | CGATCGGTAGC |
| DNA (5'-D(*CP*GP*AP*TP*CP*GP*GP*TP*AP*GP*C)-3') | p | 11 | NA | CGATCGGTAGC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2012-12-13 Deposition Author(s): Arvai, A.S. , Mol, C.D. , Tainer, J.A. , Tsutakawa, S.E.