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4EJZ

Structure of mbogg1 in complex with low affinity dna ligand

PDB DOI: 10.2210/pdb4ejz/pdb

Classification: HYDROLASE/DNA
Organism(s): Thermoanaerobacter Tengcongensis , Synthetic Construct

Deposited: 2012-04-08
Deposition Author(s): Bi, L.J. , Jiang, T. , Yang, M.Z. , Yu, H.J. , Zhang, X.E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.05 Å

Literature

Structure of mbogg1 in complex with low affinity dna ligand

Bi, L.J. , Jiang, T. , Yang, M.Z. , Yu, H.J. , Zhang, X.E.

Primary Citation of Related Structures: 4EJZ


Proteins
Molecule Chains Sequence Length Organism Sequence
3-Methyladenine DNA glycosylase A 311 Thermoanaerobacter Tengcongensis , Synthetic Construct MRGSHHHHHHGSMRMKYNVEEKGTKVIVRGIADFNLKETFESGQCFRWNEEEDGSYTGVAYDRVVNVKLEGDTLIIDNTNLTDFYDIWFDYFDLGRDYGQIKESLSKDPVLKEAIKFGQGIRILRQDTWETLVSFIVSQNNRIPQIKKVIENLATSFGNPIEYKGKIYYTFPKPEELVMYDVETIAKTRCGFRAKYIFDAASKVFSGEINLLKLHEYSTSEIRDILMTINGVGPKVADCVILYSIGRYDTFPTDVWIKRIVEHLYLKREGTPVEIQLFAIDKFGDLSGFAQQYLFYYGREMGKKIFGERKK
3-Methyladenine DNA glycosylase B 311 Thermoanaerobacter Tengcongensis , Synthetic Construct MRGSHHHHHHGSMRMKYNVEEKGTKVIVRGIADFNLKETFESGQCFRWNEEEDGSYTGVAYDRVVNVKLEGDTLIIDNTNLTDFYDIWFDYFDLGRDYGQIKESLSKDPVLKEAIKFGQGIRILRQDTWETLVSFIVSQNNRIPQIKKVIENLATSFGNPIEYKGKIYYTFPKPEELVMYDVETIAKTRCGFRAKYIFDAASKVFSGEINLLKLHEYSTSEIRDILMTINGVGPKVADCVILYSIGRYDTFPTDVWIKRIVEHLYLKREGTPVEIQLFAIDKFGDLSGFAQQYLFYYGREMGKKIFGERKK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*AP*GP*CP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*TP*AP*CP*C)-3') c 16 NA AGCGTCCANGTCTACC
DNA (5'-D(*AP*GP*CP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*TP*AP*CP*C)-3') e 16 NA AGCGTCCANGTCTACC
DNA (5'-D(*T*GP*GP*TP*AP*GP*AP*CP*TP*TP*GP*GP*AP*CP*GP*C)-3') d 16 NA TGGTAGACTTGGACGC
DNA (5'-D(*T*GP*GP*TP*AP*GP*AP*CP*TP*TP*GP*GP*AP*CP*GP*C)-3') f 16 NA TGGTAGACTTGGACGC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2012-04-08
Deposition Author(s): Bi, L.J. , Jiang, T. , Yang, M.Z. , Yu, H.J. , Zhang, X.E.