PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

4DSK

Crystal structure of fragment dna polymerase i from bacillus stearothermophilus with duplex dna, ppi and calcium

PDB DOI: 10.2210/pdb4dsk/pdb

Classification: TRANSFERASE/DNA
Organism(s): Geobacillus Stearothermophilus , Synthetic Construct

Deposited: 2012-02-19
Deposition Author(s): Abdur, R. , Caton-Willians, J. , Gan, J.H. , Huang, Z. , Liu, H.H. , Sheng, J. , Soares, A.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.18 Å

4dsk
Literature

Crystal structure of fragment dna polymerase i from bacillus stearothermophilus with duplex dna, ppi and calcium

Abdur, R. , Caton-Willians, J. , Gan, J.H. , Huang, Z. , Liu, H.H. , Sheng, J. , Soares, A.S.

Primary Citation of Related Structures: 4DSK


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*GP*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*CP*G)-3') b 14 NA GGCTACAGGACTCG
DNA (5'-D(*TP*CP*AP*CP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-3') c 17 NA TCACGAGTCCTGTAGCC

Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase A 579 Geobacillus Stearothermophilus , Synthetic Construct KMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2012-02-19
Deposition Author(s): Abdur, R. , Caton-Willians, J. , Gan, J.H. , Huang, Z. , Liu, H.H. , Sheng, J. , Soares, A.S.