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4DQI

Ternary complex of bacillus dna polymerase i large fragment, dna duplex, and dctp (paired with dg of template)

PDB DOI: 10.2210/pdb4dqi/pdb

Classification: TRANSFERASE/DNA
Organism(s): Geobacillus Kaustophilus , Synthetic Construct

Deposited: 2012-02-15
Deposition Author(s): Beese, L.S. , Wang, W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.69 Å

4dqi
Literature

Ternary complex of bacillus dna polymerase i large fragment, dna duplex, and dctp (paired with dg of template)

Beese, L.S. , Wang, W.

Primary Citation of Related Structures: 4DQI


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase I A 592 Geobacillus Kaustophilus , Synthetic Construct MESPSSEEEKPLAKMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK
DNA polymerase I D 592 Geobacillus Kaustophilus , Synthetic Construct MESPSSEEEKPLAKMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DOC))-3') b 9 NA CCTGACTCC
DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(DOC))-3') e 9 NA CCTGACTCC
DNA (5'-D(*C*AP*TP*GP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3') c 13 NA CATGGGAGTCAGG
DNA (5'-D(*C*AP*TP*GP*GP*GP*AP*GP*TP*CP*AP*GP*G)-3') f 13 NA CATGGGAGTCAGG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2012-02-15
Deposition Author(s): Beese, L.S. , Wang, W.