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4DK9

Crystal structure of mbd4 catalytic domain bound to abasic dna

PDB DOI: 10.2210/pdb4dk9/pdb

Classification: HYDROLASE/DNA
Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2012-02-03
Deposition Author(s): Drohat, A.C. , Manvilla, B.A. , Toth, E.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.76 Å

4dk9
Literature

Crystal structure of mbd4 catalytic domain bound to abasic dna

Drohat, A.C. , Manvilla, B.A. , Toth, E.A.

Primary Citation of Related Structures: 4DK9


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*AP*AP*GP*AP*CP*GP*TP*GP*GP*AP*C)-3' b 11 NA AAGACGTGGAC
5'-D(*TP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*T)-3' c 11 NA TGTCCANGTCT

Proteins
Molecule Chains Sequence Length Organism Sequence
Methyl-CpG-binding domain protein 4 A 157 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GSALSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2012-02-03
Deposition Author(s): Drohat, A.C. , Manvilla, B.A. , Toth, E.A.