PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

4DFP

Crystal structure of the large fragment of dna polymerase i from thermus aqauticus in a ternary complex with 7-(aminopentinyl)-7-deaza-dgtp

PDB DOI: 10.2210/pdb4dfp/pdb

Classification: TRANSFERASE/DNA
Organism(s): Thermus Aquaticus , Synthetic Construct

Deposited: 2012-01-24
Deposition Author(s): Baccaro, A. , Bergen, K. , Diederichs, K. , Marx, A. , Steck, A. , Struett, S. , Welte, W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2 Å

4dfp
Literature

Crystal structure of the large fragment of dna polymerase i from thermus aqauticus in a ternary complex with 7-(aminopentinyl)-7-deaza-dgtp

Baccaro, A. , Bergen, K. , Diederichs, K. , Marx, A. , Steck, A. , Struett, S. , Welte, W.

Primary Citation of Related Structures: 4DFP


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase I, thermostable A 540 Thermus Aquaticus , Synthetic Construct ALEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3') b 12 NA GACCACGGCGCC
5'-d(AAACGGCGCCGTGGTC)-3' c 16 NA AAACGGCGCCGTGGTC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2012-01-24
Deposition Author(s): Baccaro, A. , Bergen, K. , Diederichs, K. , Marx, A. , Steck, A. , Struett, S. , Welte, W.