4C2I
Cryo-em structure of dengue virus serotype 1 complexed with fab fragments of human antibody 1f4
PDB DOI: 10.2210/pdb4c2i/pdb
Classification: VIRUS Organism(s): Dengue Virus 1 , Homo Sapiens
Deposited: 2013-08-18 Deposition Author(s): Crowe Junior, J.E. , De Alwis, R. , De Silva, A. , Fibriansah, G. , Harris, E. , Ibarra, K.D. , Kostyuchenko, V.A. , Lok, S.-M. , Ng, T.-S. , Smith, S.A. , Tan, J.L.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 6.0 Å
Cryo-em structure of dengue virus serotype 1 complexed with fab fragments of human antibody 1f4
Crowe Junior, J.E. , De Alwis, R. , De Silva, A. , Fibriansah, G. , Harris, E. , Ibarra, K.D. , Kostyuchenko, V.A. , Lok, S.-M. , Ng, T.-S. , Smith, S.A. , Tan, J.L.
Primary Citation of Related Structures: 4C2I
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| ENVELOPE PROTEIN | A | 495 | Dengue Virus 1 , Homo Sapiens | MRCVGISNRDFVEGLSATGWVDVVLEHGSCVTTMAKDKPTLDIELLKTEVTNPAVLRKLCIEAKISNTTTDSRCPTQGEATLVEEQDANFVCRRTFVDRGWGNGCGLFGKGSLITCAKFKCVTKLEGKIVQYENLKYSVIVTVHTGDQHQVGNESTEHGTTATITPQAPTTEIQLTDYGALTLDCSPRTGLDFNEMVLLTMKEKSWLVHKQWFLDLPLPWTSGASTSQETWNRQDLLVTFKTAHAKKQEVVVLGSQEGAMHTALTGATEIQTSGTTTIFAGHLKCRLKMDKLTLKGMSYVMCTGSFKLEKEVAETQHGTVLVQIKYEGTDAPCKIPFSTQDEKGVTQNGRLITANPIVTDKEKPVNIEAEPPFGESYIVIGAGEKALKLSWFKKGSSIGKMFEATARGARRMAILGDTAWDFGSIGGVFTSVGKLVHQIFGTAYGVLFSGVSWTMKIGIGVLLTWLGLNSRSTSLSMTCIAVGLVTLYLGVMVQA |
| ENVELOPE PROTEIN | C | 495 | Dengue Virus 1 , Homo Sapiens | MRCVGISNRDFVEGLSATGWVDVVLEHGSCVTTMAKDKPTLDIELLKTEVTNPAVLRKLCIEAKISNTTTDSRCPTQGEATLVEEQDANFVCRRTFVDRGWGNGCGLFGKGSLITCAKFKCVTKLEGKIVQYENLKYSVIVTVHTGDQHQVGNESTEHGTTATITPQAPTTEIQLTDYGALTLDCSPRTGLDFNEMVLLTMKEKSWLVHKQWFLDLPLPWTSGASTSQETWNRQDLLVTFKTAHAKKQEVVVLGSQEGAMHTALTGATEIQTSGTTTIFAGHLKCRLKMDKLTLKGMSYVMCTGSFKLEKEVAETQHGTVLVQIKYEGTDAPCKIPFSTQDEKGVTQNGRLITANPIVTDKEKPVNIEAEPPFGESYIVIGAGEKALKLSWFKKGSSIGKMFEATARGARRMAILGDTAWDFGSIGGVFTSVGKLVHQIFGTAYGVLFSGVSWTMKIGIGVLLTWLGLNSRSTSLSMTCIAVGLVTLYLGVMVQA |
| ENVELOPE PROTEIN | E | 495 | Dengue Virus 1 , Homo Sapiens | MRCVGISNRDFVEGLSATGWVDVVLEHGSCVTTMAKDKPTLDIELLKTEVTNPAVLRKLCIEAKISNTTTDSRCPTQGEATLVEEQDANFVCRRTFVDRGWGNGCGLFGKGSLITCAKFKCVTKLEGKIVQYENLKYSVIVTVHTGDQHQVGNESTEHGTTATITPQAPTTEIQLTDYGALTLDCSPRTGLDFNEMVLLTMKEKSWLVHKQWFLDLPLPWTSGASTSQETWNRQDLLVTFKTAHAKKQEVVVLGSQEGAMHTALTGATEIQTSGTTTIFAGHLKCRLKMDKLTLKGMSYVMCTGSFKLEKEVAETQHGTVLVQIKYEGTDAPCKIPFSTQDEKGVTQNGRLITANPIVTDKEKPVNIEAEPPFGESYIVIGAGEKALKLSWFKKGSSIGKMFEATARGARRMAILGDTAWDFGSIGGVFTSVGKLVHQIFGTAYGVLFSGVSWTMKIGIGVLLTWLGLNSRSTSLSMTCIAVGLVTLYLGVMVQA |
| POLYPROTEIN | B | 75 | Dengue Virus 1 , Homo Sapiens | SVALAPHVGLGLETRTETWMSSEGAWKQIQKVETWALGHPGFTVIALFLAHAIGTSITQKGIIFILLMLVTPSMA |
| POLYPROTEIN | D | 75 | Dengue Virus 1 , Homo Sapiens | SVALAPHVGLGLETRTETWMSSEGAWKQIQKVETWALGHPGFTVIALFLAHAIGTSITQKGIIFILLMLVTPSMA |
| POLYPROTEIN | F | 75 | Dengue Virus 1 , Homo Sapiens | SVALAPHVGLGLETRTETWMSSEGAWKQIQKVETWALGHPGFTVIALFLAHAIGTSITQKGIIFILLMLVTPSMA |
| HEAVY CHAIN FAB FRAGMENT OF ANTIBODY 1F4 | H | 232 | Dengue Virus 1 , Homo Sapiens | GSWAQVQLVESGGGVVQPGRSLRLSCAASGFTFSAYGMHWVRQAPGKGLEWVAIIWYDGSNKYYADSVKGRFTISRDNSKNTLHLQMNSLRAEDTAIYYCARDKNPGTKPYYHYGMDVWGQGTTVTVSSAGTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC |
| HEAVY CHAIN FAB FRAGMENT OF ANTIBODY 1F4 | M | 232 | Dengue Virus 1 , Homo Sapiens | GSWAQVQLVESGGGVVQPGRSLRLSCAASGFTFSAYGMHWVRQAPGKGLEWVAIIWYDGSNKYYADSVKGRFTISRDNSKNTLHLQMNSLRAEDTAIYYCARDKNPGTKPYYHYGMDVWGQGTTVTVSSAGTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC |
| LIGHT CHAIN FAB FRAGMENT OF ANTIBODY 1F4 | L | 239 | Dengue Virus 1 , Homo Sapiens | LATMAWMMLLLLTLITHCAGSWAQSVLTQPPSVSEAPRQRVTISCSGSSSNIGNNAVNWYQQFPGKAPKLLIYYDDLLPSGVSDRFSGSKSGTSASLAISGLQSEDEAYYYCAAWDDSLIGVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
| LIGHT CHAIN FAB FRAGMENT OF ANTIBODY 1F4 | N | 239 | Dengue Virus 1 , Homo Sapiens | LATMAWMMLLLLTLITHCAGSWAQSVLTQPPSVSEAPRQRVTISCSGSSSNIGNNAVNWYQQFPGKAPKLLIYYDDLLPSGVSDRFSGSKSGTSASLAISGLQSEDEAYYYCAAWDDSLIGVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2013-08-18 Deposition Author(s): Crowe Junior, J.E. , De Alwis, R. , De Silva, A. , Fibriansah, G. , Harris, E. , Ibarra, K.D. , Kostyuchenko, V.A. , Lok, S.-M. , Ng, T.-S. , Smith, S.A. , Tan, J.L.