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FASTA Sequence PDB Format mmCIF Format
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4BY9

The structure of the box cd enzyme reveals regulation of rrna methylation

PDB DOI: 10.2210/pdb4by9/pdb

Classification: TRANSFERASE/RNA
Organism(s): Pyrococcus Furiosus , Synthetic Construct

Deposited: 2013-07-18
Deposition Author(s): Carlomagno, T. , Gabel, F. , Lapinaite, A. , Rakwalska-Bange, M. , Simon, B. , Skjaerven, L.

Experimental Data Snapshot

Method: SOLUTION NMR
Resolution: N.A.

4by9
Literature

The structure of the box cd enzyme reveals regulation of rrna methylation

Carlomagno, T. , Gabel, F. , Lapinaite, A. , Rakwalska-Bange, M. , Simon, B. , Skjaerven, L.

Primary Citation of Related Structures: 4BY9


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
SSR26 a 72 NA GCGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGAAAGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGC
SSR26 b 72 NA GCGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGAAAGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGC
5'-R(*UP*CP*GP*CP*CP*CP*AP*UP*CP*AP*CP)-3' w 11 NA UCGCCCAUCAC
5'-R(*UP*CP*GP*CP*CP*CP*AP*UP*CP*AP*CP)-3' x 11 NA UCGCCCAUCAC
5'-R(*UP*CP*GP*CP*CP*CP*AP*UP*CP*AP*CP)-3' y 11 NA UCGCCCAUCAC
5'-R(*UP*CP*GP*CP*CP*CP*AP*UP*CP*AP*CP)-3' z 11 NA UCGCCCAUCAC

Proteins
Molecule Chains Sequence Length Organism Sequence
NOP5/NOP56 RELATED PROTEIN C 366 Pyrococcus Furiosus , Synthetic Construct FISENVRGIYAFDENGNLIEKRYFTDKPEKVLDQLLKGEITKDLEELLNSLKEKGYDEFVFEHPELSRRAKELGFSATTEFPNIAGERLRSNPEEFLGENWFEEYYKVGVALTRMRIQEQSGARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPELDELLPKHPQYVAFVKTVGHRDNINEEVLRELGLSEEKIKKILEAKEKTMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVGAKLAARLISLAGGLRELAMMPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEARIREIKEKY
NOP5/NOP56 RELATED PROTEIN F 366 Pyrococcus Furiosus , Synthetic Construct FISENVRGIYAFDENGNLIEKRYFTDKPEKVLDQLLKGEITKDLEELLNSLKEKGYDEFVFEHPELSRRAKELGFSATTEFPNIAGERLRSNPEEFLGENWFEEYYKVGVALTRMRIQEQSGARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPELDELLPKHPQYVAFVKTVGHRDNINEEVLRELGLSEEKIKKILEAKEKTMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVGAKLAARLISLAGGLRELAMMPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEARIREIKEKY
NOP5/NOP56 RELATED PROTEIN I 366 Pyrococcus Furiosus , Synthetic Construct FISENVRGIYAFDENGNLIEKRYFTDKPEKVLDQLLKGEITKDLEELLNSLKEKGYDEFVFEHPELSRRAKELGFSATTEFPNIAGERLRSNPEEFLGENWFEEYYKVGVALTRMRIQEQSGARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPELDELLPKHPQYVAFVKTVGHRDNINEEVLRELGLSEEKIKKILEAKEKTMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVGAKLAARLISLAGGLRELAMMPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEARIREIKEKY
NOP5/NOP56 RELATED PROTEIN L 366 Pyrococcus Furiosus , Synthetic Construct FISENVRGIYAFDENGNLIEKRYFTDKPEKVLDQLLKGEITKDLEELLNSLKEKGYDEFVFEHPELSRRAKELGFSATTEFPNIAGERLRSNPEEFLGENWFEEYYKVGVALTRMRIQEQSGARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPELDELLPKHPQYVAFVKTVGHRDNINEEVLRELGLSEEKIKKILEAKEKTMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVGAKLAARLISLAGGLRELAMMPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEARIREIKEKY
50S RIBOSOMAL PROTEIN L7AE D 121 Pyrococcus Furiosus , Synthetic Construct KPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELMK
50S RIBOSOMAL PROTEIN L7AE G 121 Pyrococcus Furiosus , Synthetic Construct KPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELMK
50S RIBOSOMAL PROTEIN L7AE J 121 Pyrococcus Furiosus , Synthetic Construct KPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELMK
50S RIBOSOMAL PROTEIN L7AE M 121 Pyrococcus Furiosus , Synthetic Construct KPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELMK
FIBRILLARIN-LIKE RRNA/TRNA 2'-O-METHYLTRANSFERASE E 227 Pyrococcus Furiosus , Synthetic Construct MVEVKKHKFPGVYVVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERRNIIPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKRGGYGMIAVKSRSIDVTKEPEQVFKEVERELSEYFEVIERLNLEPYEKDHALFVVRKP
FIBRILLARIN-LIKE RRNA/TRNA 2'-O-METHYLTRANSFERASE H 227 Pyrococcus Furiosus , Synthetic Construct MVEVKKHKFPGVYVVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERRNIIPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKRGGYGMIAVKSRSIDVTKEPEQVFKEVERELSEYFEVIERLNLEPYEKDHALFVVRKP
FIBRILLARIN-LIKE RRNA/TRNA 2'-O-METHYLTRANSFERASE K 227 Pyrococcus Furiosus , Synthetic Construct MVEVKKHKFPGVYVVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERRNIIPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKRGGYGMIAVKSRSIDVTKEPEQVFKEVERELSEYFEVIERLNLEPYEKDHALFVVRKP
FIBRILLARIN-LIKE RRNA/TRNA 2'-O-METHYLTRANSFERASE N 227 Pyrococcus Furiosus , Synthetic Construct MVEVKKHKFPGVYVVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERRNIIPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKRGGYGMIAVKSRSIDVTKEPEQVFKEVERELSEYFEVIERLNLEPYEKDHALFVVRKP
Experimental Data

Method: SOLUTION NMR

Deposited Date: 2013-07-18
Deposition Author(s): Carlomagno, T. , Gabel, F. , Lapinaite, A. , Rakwalska-Bange, M. , Simon, B. , Skjaerven, L.