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4B5M
Neisseria ap endonuclease bound to the substrate with a cytosine orphan base
PDB DOI: 10.2210/pdb4b5m/pdb
Classification: HYDROLASE/DNA Organism(s): Neisseria Meningitidis , Synthetic Construct
Deposited: 2012-08-06 Deposition Author(s): Baldwin, G.S. , Carpenter, E.P. , Freemont, P.S. , Jensen, K. , Lu, D. , Macdonald, J.T. , Silhan, J. , Tang, C.M.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.758 Å
Neisseria ap endonuclease bound to the substrate with a cytosine orphan base
Baldwin, G.S. , Carpenter, E.P. , Freemont, P.S. , Jensen, K. , Lu, D. , Macdonald, J.T. , Silhan, J. , Tang, C.M.
Primary Citation of Related Structures: 4B5M
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| PUTATIVE EXODEOXYRIBONUCLEASE | A | 259 | Neisseria Meningitidis , Synthetic Construct | MLKIISANVNGIRSAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHCAEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFGRLSVISLYLPSGSSAEERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVPGYTWWSNRGQAYAKDVGWRIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVEYDYAAE |
| PUTATIVE EXODEOXYRIBONUCLEASE | B | 259 | Neisseria Meningitidis , Synthetic Construct | MLKIISANVNGIRSAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHCAEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFGRLSVISLYLPSGSSAEERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVPGYTWWSNRGQAYAKDVGWRIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVEYDYAAE |
| PUTATIVE EXODEOXYRIBONUCLEASE | C | 259 | Neisseria Meningitidis , Synthetic Construct | MLKIISANVNGIRSAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHCAEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFGRLSVISLYLPSGSSAEERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVPGYTWWSNRGQAYAKDVGWRIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVEYDYAAE |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 5'-D(*3DRP*CP*AP*TP*CP*GP)-3' | l | 6 | NA | NCATCG |
| 5'-D(*3DRP*CP*AP*TP*CP*GP)-3' | m | 6 | NA | NCATCG |
| 5'-D(*3DRP*CP*AP*TP*CP*GP)-3' | n | 6 | NA | NCATCG |
| 5'-D(*GP*CP*TP*AP*CP)-3' | u | 5 | NA | GCTAC |
| 5'-D(*GP*CP*TP*AP*CP)-3' | w | 5 | NA | GCTAC |
| 5'-D(*GP*CP*TP*AP*CP)-3' | y | 5 | NA | GCTAC |
| 5'-D(*CP*GP*AP*TP*GP*CP*GP*TP*AP*GP*CP)-3' | v | 11 | NA | CGATGCGTAGC |
| 5'-D(*CP*GP*AP*TP*GP*CP*GP*TP*AP*GP*CP)-3' | x | 11 | NA | CGATGCGTAGC |
| 5'-D(*CP*GP*AP*TP*GP*CP*GP*TP*AP*GP*CP)-3' | z | 11 | NA | CGATGCGTAGC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2012-08-06 Deposition Author(s): Baldwin, G.S. , Carpenter, E.P. , Freemont, P.S. , Jensen, K. , Lu, D. , Macdonald, J.T. , Silhan, J. , Tang, C.M.