PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

3W98

Crystal structure of human nucleosome core particle lacking h3.1 n-terminal region

PDB DOI: 10.2210/pdb3w98/pdb

Classification: STRUCTURAL PROTEIN/DNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2013-04-01
Deposition Author(s): Horikoshi, N. , Iwasaki, W. , Kagawa, W. , Kurumizaka, H. , Miya, Y. , Osakabe, A. , Shibata, T. , Tachiwana, H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.42 Å

3w98
Literature

Crystal structure of human nucleosome core particle lacking h3.1 n-terminal region

Horikoshi, N. , Iwasaki, W. , Kagawa, W. , Kurumizaka, H. , Miya, Y. , Osakabe, A. , Shibata, T. , Tachiwana, H.

Primary Citation of Related Structures: 3W98


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.1 A 112 Homo Sapiens , Synthetic Construct GSHMSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.1 E 112 Homo Sapiens , Synthetic Construct GSHMSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 106 Homo Sapiens , Synthetic Construct GSHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 106 Homo Sapiens , Synthetic Construct GSHMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1-B/E C 133 Homo Sapiens , Synthetic Construct GSHMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2A type 1-B/E G 133 Homo Sapiens , Synthetic Construct GSHMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2B type 1-J D 129 Homo Sapiens , Synthetic Construct GSHMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B type 1-J H 129 Homo Sapiens , Synthetic Construct GSHMPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
146-mer DNA i 146 NA ATCAATATCCACCTGCAGATTCTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGAATTCAGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGAATCTGCAGGTGGATATTGAT
146-mer DNA j 146 NA ATCAATATCCACCTGCAGATTCTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGAATTCAGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGAATCTGCAGGTGGATATTGAT
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2013-04-01
Deposition Author(s): Horikoshi, N. , Iwasaki, W. , Kagawa, W. , Kurumizaka, H. , Miya, Y. , Osakabe, A. , Shibata, T. , Tachiwana, H.