3W39
Crystal structure of hla-b*5201 in complexed with hiv immunodominant epitope (taftipsi)
PDB DOI: 10.2210/pdb3w39/pdb
Classification: IMMUNE SYSTEM Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2012-12-13 Deposition Author(s): Akahoshi, T. , Ariumi, Y. , Brumme, Z.L. , Carlson, J.M. , Chikata, T. , Fukunaga, Y. , Gatanaga, H. , Honda, K. , John, M. , Kanda, R. , Kawashima, Y. , Kuroki, K. , Kuse, N. , Maenaka, K. , Mallal, S. , Matsubara, H. , Murakoshi, H. , Oka, S. , Ose, T. , Pfeifer, N. , Takiguchi, M. , Yagita, Y.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.1 Å
Crystal structure of hla-b*5201 in complexed with hiv immunodominant epitope (taftipsi)
Akahoshi, T. , Ariumi, Y. , Brumme, Z.L. , Carlson, J.M. , Chikata, T. , Fukunaga, Y. , Gatanaga, H. , Honda, K. , John, M. , Kanda, R. , Kawashima, Y. , Kuroki, K. , Kuse, N. , Maenaka, K. , Mallal, S. , Matsubara, H. , Murakoshi, H. , Oka, S. , Ose, T. , Pfeifer, N. , Takiguchi, M. , Yagita, Y.
Primary Citation of Related Structures: 3W39
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| HLA class I histocompatibility antigen, B-52 alpha chain | A | 277 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MGSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRTEPRAPWIEQEGPEYWDRETQISKTNTQTYRENLRIALRYYNQSEAGSHTWQTMYGCDVGPDGRLLRGHNQYAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAAREAEQLRAYLEGLCVEWLRRHLENGKETLQRADPPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP |
| HLA class I histocompatibility antigen, B-52 alpha chain | D | 277 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MGSHSMRYFYTAMSRPGRGEPRFIAVGYVDDTQFVRFDSDAASPRTEPRAPWIEQEGPEYWDRETQISKTNTQTYRENLRIALRYYNQSEAGSHTWQTMYGCDVGPDGRLLRGHNQYAYDGKDYIALNEDLSSWTAADTAAQITQRKWEAAREAEQLRAYLEGLCVEWLRRHLENGKETLQRADPPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEP |
| Beta-2-microglobulin | B | 100 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| Beta-2-microglobulin | E | 100 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM |
| peptid from Gag-Pol polyprotein | C | 8 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | TAFTIPSI |
| peptid from Gag-Pol polyprotein | F | 8 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | TAFTIPSI |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2012-12-13 Deposition Author(s): Akahoshi, T. , Ariumi, Y. , Brumme, Z.L. , Carlson, J.M. , Chikata, T. , Fukunaga, Y. , Gatanaga, H. , Honda, K. , John, M. , Kanda, R. , Kawashima, Y. , Kuroki, K. , Kuse, N. , Maenaka, K. , Mallal, S. , Matsubara, H. , Murakoshi, H. , Oka, S. , Ose, T. , Pfeifer, N. , Takiguchi, M. , Yagita, Y.