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3VW3

Antibody 64m-5 fab in complex with a double-stranded dna (6-4) photoproduct

PDB DOI: 10.2210/pdb3vw3/pdb

Classification: IMMUNE SYSTEM/DNA
Organism(s): Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2012-07-30
Deposition Author(s): Mizutani, R. , Satow, Y. , Yokoyama, H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.5 Å

3vw3
Literature

Antibody 64m-5 fab in complex with a double-stranded dna (6-4) photoproduct

Mizutani, R. , Satow, Y. , Yokoyama, H.

Primary Citation of Related Structures: 3VW3


Proteins
Molecule Chains Sequence Length Organism Sequence
Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain) L 217 Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) DVLMTQTPLSLPVSLGDQASISCRSSQNIVHSNGYTYLEWYLQKPGQSPKLLIYTVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFRGSHVPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE
Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain) H 220 Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) EVQLQQSGTVLARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGTIYPGNSDTTYSQKFKGKAKLTAVTSTSTAYMELSSLTNEDSAVYYCSRRNYGSSYAMDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPR

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*GP*CP*GP*AP*GP*TP*GP*AP*(64T)P*(5PY)P*AP*TP*GP*GP*AP*CP*GP*G)-3') a 18 NA GCGAGTGATTATGGACGG
DNA (5'-D(*CP*CP*CP*GP*TP*CP*CP*AP*TP*AP*AP*TP*CP*AP*CP*TP*CP*G)-3') b 18 NA CCCGTCCATAATCACTCG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2012-07-30
Deposition Author(s): Mizutani, R. , Satow, Y. , Yokoyama, H.