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3VK7

Crystal structure of dna-glycosylase bound to dna containing 5-hydroxyuracil

PDB DOI: 10.2210/pdb3vk7/pdb

Classification: HYDROLASE/DNA
Organism(s): Acanthamoeba Polyphaga Mimivirus , Synthetic Construct

Deposited: 2011-11-10
Deposition Author(s): Averill, A. , Doublie, S. , Imamura, K. , Wallace, S.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.1 Å

3vk7
Literature

Crystal structure of dna-glycosylase bound to dna containing 5-hydroxyuracil

Averill, A. , Doublie, S. , Imamura, K. , Wallace, S.S.

Primary Citation of Related Structures: 3VK7


Proteins
Molecule Chains Sequence Length Organism Sequence
Probable formamidopyrimidine-DNA glycosylase A 295 Acanthamoeba Polyphaga Mimivirus , Synthetic Construct MPQGPEVALTADILEKYFKGKTLEYIDFISGRYSKSEPEGYDDFIANLPLKVSNVDTKGKFLWFELFDPNDKSNKWYIWNTFGLTGMWSLFEAKYTRAVLSFDNELMAYFSDMRNFGTFKFSNSEKELKRKLNELGPDFLKNDDIDISKIKKYKQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQEIENLWYWIKYETKLAYDSNHIGYMVNLENESSKIGRKNYHPNIHPTEKEFDFLVYRKKKDPNGNKVIADKIIGSGKNKRTTYWAPAIQKLEHHHHHH
Probable formamidopyrimidine-DNA glycosylase B 295 Acanthamoeba Polyphaga Mimivirus , Synthetic Construct MPQGPEVALTADILEKYFKGKTLEYIDFISGRYSKSEPEGYDDFIANLPLKVSNVDTKGKFLWFELFDPNDKSNKWYIWNTFGLTGMWSLFEAKYTRAVLSFDNELMAYFSDMRNFGTFKFSNSEKELKRKLNELGPDFLKNDDIDISKIKKYKQPIVALLMDQKKIGSGLGNYLVAEILYRAKIDPHKLGSNLTDQEIENLWYWIKYETKLAYDSNHIGYMVNLENESSKIGRKNYHPNIHPTEKEFDFLVYRKKKDPNGNKVIADKIIGSGKNKRTTYWAPAIQKLEHHHHHH

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*GP*TP*AP*GP*AP*CP*GP*TP*GP*GP*AP*CP*G)-3') c 13 NA GTAGACGTGGACG
DNA (5'-D(*GP*TP*AP*GP*AP*CP*GP*TP*GP*GP*AP*CP*G)-3') e 13 NA GTAGACGTGGACG
DNA (5'-D(*CP*GP*TP*CP*CP*AP*(OHU)P*GP*TP*CP*TP*AP*C)-3') d 13 NA CGTCCAXGTCTAC
DNA (5'-D(*CP*GP*TP*CP*CP*AP*(OHU)P*GP*TP*CP*TP*AP*C)-3') f 13 NA CGTCCAXGTCTAC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2011-11-10
Deposition Author(s): Averill, A. , Doublie, S. , Imamura, K. , Wallace, S.S.