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3V21

Crystal structure of type iif restriction endonuclease bse634i with cognate dna

PDB DOI: 10.2210/pdb3v21/pdb

Classification: DNA BINDING PROTEIN, HYDROLASE/DNA
Organism(s): Ki Polyomavirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2011-12-11
Deposition Author(s): Golovenko, D. , Grazulis, S. , Manakova, E.N. , Tamulaitiene, G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.7 Å

3v21
Literature

Crystal structure of type iif restriction endonuclease bse634i with cognate dna

Golovenko, D. , Grazulis, S. , Manakova, E.N. , Tamulaitiene, G.

Primary Citation of Related Structures: 3V21


Proteins
Molecule Chains Sequence Length Organism Sequence
Endonuclease Bse634IR A 293 Ki Polyomavirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MTTNLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETREKLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMAYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIKK
Endonuclease Bse634IR B 293 Ki Polyomavirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MTTNLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETREKLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMAYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIKK
Endonuclease Bse634IR C 293 Ki Polyomavirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MTTNLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETREKLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMAYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIKK
Endonuclease Bse634IR D 293 Ki Polyomavirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MTTNLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETREKLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMAYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIKK
Endonuclease Bse634IR E 293 Ki Polyomavirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MTTNLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETREKLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMAYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIKK
Endonuclease Bse634IR F 293 Ki Polyomavirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MTTNLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETREKLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMAYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIKK
Endonuclease Bse634IR G 293 Ki Polyomavirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MTTNLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETREKLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMAYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIKK
Endonuclease Bse634IR H 293 Ki Polyomavirus , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MTTNLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETREKLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMAYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIKK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*TP*TP*CP*GP*AP*CP*CP*GP*GP*TP*CP*GP*A)-3') i 13 NA TTCGACCGGTCGA
DNA (5'-D(*TP*TP*CP*GP*AP*CP*CP*GP*GP*TP*CP*GP*A)-3') j 13 NA TTCGACCGGTCGA
DNA (5'-D(*TP*TP*CP*GP*AP*CP*CP*GP*GP*TP*CP*GP*A)-3') k 13 NA TTCGACCGGTCGA
DNA (5'-D(*TP*TP*CP*GP*AP*CP*CP*GP*GP*TP*CP*GP*A)-3') l 13 NA TTCGACCGGTCGA
DNA (5'-D(*TP*TP*CP*GP*AP*CP*CP*GP*GP*TP*CP*GP*A)-3') m 13 NA TTCGACCGGTCGA
DNA (5'-D(*TP*TP*CP*GP*AP*CP*CP*GP*GP*TP*CP*GP*A)-3') n 13 NA TTCGACCGGTCGA
DNA (5'-D(*TP*TP*CP*GP*AP*CP*CP*GP*GP*TP*CP*GP*A)-3') o 13 NA TTCGACCGGTCGA
DNA (5'-D(*TP*TP*CP*GP*AP*CP*CP*GP*GP*TP*CP*GP*A)-3') p 13 NA TTCGACCGGTCGA
DNA (5'-D(*TP*TP*CP*GP*AP*CP*CP*GP*GP*TP*CP*GP*A)-3') r 13 NA TTCGACCGGTCGA
DNA (5'-D(*TP*TP*CP*GP*AP*CP*CP*GP*GP*TP*CP*GP*A)-3') s 13 NA TTCGACCGGTCGA
DNA (5'-D(*TP*TP*CP*GP*AP*CP*CP*GP*GP*TP*CP*GP*A)-3') v 13 NA TTCGACCGGTCGA
DNA (5'-D(*TP*TP*CP*GP*AP*CP*CP*GP*GP*TP*CP*GP*A)-3') x 13 NA TTCGACCGGTCGA
DNA (5'-D(*TP*TP*CP*GP*AP*CP*CP*GP*GP*TP*CP*GP*A)-3') y 13 NA TTCGACCGGTCGA
DNA (5'-D(*TP*TP*CP*GP*AP*CP*CP*GP*GP*TP*CP*GP*A)-3') z 13 NA TTCGACCGGTCGA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2011-12-11
Deposition Author(s): Golovenko, D. , Grazulis, S. , Manakova, E.N. , Tamulaitiene, G.