3TBY
Crystal structure of the murine class i major histocompatibility complex h-2db in complex with the lcmv-derived gp33 altered peptide ligand (v3p, y4f)
PDB DOI: 10.2210/pdb3tby/pdb
Classification: Immune system/agonist Organism(s): Mus Musculus , Synthetic Construct
Deposited: 2011-08-08 Deposition Author(s): Achour, A. , Allerbring, E.B. , Badia-Martinez, D. , Duru, A.D. , Madhurantakam, C. , Mazumdar, P.A. , Nygren, P. , Sandalova, T. , Uchtenhagen, H.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.5 Å
Crystal structure of the murine class i major histocompatibility complex h-2db in complex with the lcmv-derived gp33 altered peptide ligand (v3p, y4f)
Achour, A. , Allerbring, E.B. , Badia-Martinez, D. , Duru, A.D. , Madhurantakam, C. , Mazumdar, P.A. , Nygren, P. , Sandalova, T. , Uchtenhagen, H.
Primary Citation of Related Structures: 3TBY
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| H-2 class I histocompatibility antigen, D-B alpha chain | A | 276 | Mus Musculus , Synthetic Construct | GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEP |
| H-2 class I histocompatibility antigen, D-B alpha chain | D | 276 | Mus Musculus , Synthetic Construct | GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEP |
| H-2 class I histocompatibility antigen, D-B alpha chain | G | 276 | Mus Musculus , Synthetic Construct | GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEP |
| H-2 class I histocompatibility antigen, D-B alpha chain | J | 276 | Mus Musculus , Synthetic Construct | GPHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPWMEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGCDLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSGAAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQNYTCRVYHEGLPEPLTLRWEP |
| Beta-2-microglobulin | B | 99 | Mus Musculus , Synthetic Construct | IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSMAEPKTVYWDRDM |
| Beta-2-microglobulin | E | 99 | Mus Musculus , Synthetic Construct | IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSMAEPKTVYWDRDM |
| Beta-2-microglobulin | H | 99 | Mus Musculus , Synthetic Construct | IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSMAEPKTVYWDRDM |
| Beta-2-microglobulin | K | 99 | Mus Musculus , Synthetic Construct | IQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDSMAEPKTVYWDRDM |
| GLYCOPROTEIN GPC | C | 9 | Mus Musculus , Synthetic Construct | KAPFNFATM |
| GLYCOPROTEIN GPC | F | 9 | Mus Musculus , Synthetic Construct | KAPFNFATM |
| GLYCOPROTEIN GPC | I | 9 | Mus Musculus , Synthetic Construct | KAPFNFATM |
| GLYCOPROTEIN GPC | L | 9 | Mus Musculus , Synthetic Construct | KAPFNFATM |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2011-08-08 Deposition Author(s): Achour, A. , Allerbring, E.B. , Badia-Martinez, D. , Duru, A.D. , Madhurantakam, C. , Mazumdar, P.A. , Nygren, P. , Sandalova, T. , Uchtenhagen, H.