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3SSD

Dna binding domain of restriction endonuclease bound to dna

PDB DOI: 10.2210/pdb3ssd/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Adineta Vaga , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2011-07-08
Deposition Author(s): Grazulis, S. , Siksnys, V. , Sukackaite, R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.2 Å

3ssd
Literature

Dna binding domain of restriction endonuclease bound to dna

Grazulis, S. , Siksnys, V. , Sukackaite, R.

Primary Citation of Related Structures: 3SSD


Proteins
Molecule Chains Sequence Length Organism Sequence
5-methylcytosine-specific restriction enzyme B A 170 Adineta Vaga , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MESIQPWIEKFIKQAQQQRSQSTKDYPTSYRNLRVKLSFGYGNFTSIPWFAFLGEGQEASNGIYPVILYYKDFDELVLAYGISDTNEPHAQWQFSSDIPKTIAEYFQATSGVYPKKYGQSYYACSQKVSQGIDYTRFASMLDNIINDYKLIFNSGKSVIPPLEGHHHHHH
5-methylcytosine-specific restriction enzyme B B 170 Adineta Vaga , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MESIQPWIEKFIKQAQQQRSQSTKDYPTSYRNLRVKLSFGYGNFTSIPWFAFLGEGQEASNGIYPVILYYKDFDELVLAYGISDTNEPHAQWQFSSDIPKTIAEYFQATSGVYPKKYGQSYYACSQKVSQGIDYTRFASMLDNIINDYKLIFNSGKSVIPPLEGHHHHHH

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*T*GP*AP*GP*AP*(5CM)P*CP*GP*GP*TP*AP*GP*C)-3') c 13 NA TGAGACCGGTAGC
DNA (5'-D(*A*GP*CP*TP*AP*CP*CP*GP*GP*TP*CP*TP*C)-3') d 13 NA AGCTACCGGTCTC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2011-07-08
Deposition Author(s): Grazulis, S. , Siksnys, V. , Sukackaite, R.