3SKU
Herpes simplex virus glycoprotein d bound to the human receptor nectin-1
PDB DOI: 10.2210/pdb3sku/pdb
Classification: VIRAL PROTEIN/PROTEIN BINDING Organism(s): Salmonella Enterica , Burkholderia Pseudomallei 1026B
Deposited: 2011-06-23 Deposition Author(s): Bhargava, A.K. , Carfi, A. , Cohen, G.H. , Di Giovine, P. , Eisenberg, R.J. , Krummenacher, C. , Lou, H. , Luftig, M.A. , Settembre, E.C.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 4 Å
Herpes simplex virus glycoprotein d bound to the human receptor nectin-1
Bhargava, A.K. , Carfi, A. , Cohen, G.H. , Di Giovine, P. , Eisenberg, R.J. , Krummenacher, C. , Lou, H. , Luftig, M.A. , Settembre, E.C.
Primary Citation of Related Structures: 3SKU
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Glycoprotein D | A | 285 | Salmonella Enterica , Burkholderia Pseudomallei 1026B | KYALADASLKMADPNRFRGKDLPVLDQLTDPPGVRRVYHIQAGLPDPFQPPSLPITVYYAVLERACRSVLLNAPSEAPQIVRGASEDVRKQPYNLTIAWFRMGGNCAIPITVMEYTECSYNKSLGACPIRTQPRWNYYDSFSAVSEDNLGFLMHAPAFETAGTYLRLVKINDWTEITQFILEHRAKGSCKYALPLRIPPSACLSPQAYQQGVTVDSIGMLPRFIPENQRTVAVYSLKIAGWHGPKAPYTSTLLPPELSETPNATQPELAPEDPEDSALLEDPVGT |
| Glycoprotein D | B | 285 | Salmonella Enterica , Burkholderia Pseudomallei 1026B | KYALADASLKMADPNRFRGKDLPVLDQLTDPPGVRRVYHIQAGLPDPFQPPSLPITVYYAVLERACRSVLLNAPSEAPQIVRGASEDVRKQPYNLTIAWFRMGGNCAIPITVMEYTECSYNKSLGACPIRTQPRWNYYDSFSAVSEDNLGFLMHAPAFETAGTYLRLVKINDWTEITQFILEHRAKGSCKYALPLRIPPSACLSPQAYQQGVTVDSIGMLPRFIPENQRTVAVYSLKIAGWHGPKAPYTSTLLPPELSETPNATQPELAPEDPEDSALLEDPVGT |
| Glycoprotein D | C | 285 | Salmonella Enterica , Burkholderia Pseudomallei 1026B | KYALADASLKMADPNRFRGKDLPVLDQLTDPPGVRRVYHIQAGLPDPFQPPSLPITVYYAVLERACRSVLLNAPSEAPQIVRGASEDVRKQPYNLTIAWFRMGGNCAIPITVMEYTECSYNKSLGACPIRTQPRWNYYDSFSAVSEDNLGFLMHAPAFETAGTYLRLVKINDWTEITQFILEHRAKGSCKYALPLRIPPSACLSPQAYQQGVTVDSIGMLPRFIPENQRTVAVYSLKIAGWHGPKAPYTSTLLPPELSETPNATQPELAPEDPEDSALLEDPVGT |
| Poliovirus receptor-related protein 1 | E | 319 | Salmonella Enterica , Burkholderia Pseudomallei 1026B | QVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEFPYTPSPPEHHHHH |
| Poliovirus receptor-related protein 1 | D | 319 | Salmonella Enterica , Burkholderia Pseudomallei 1026B | QVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEFPYTPSPPEHHHHH |
| Poliovirus receptor-related protein 1 | F | 319 | Salmonella Enterica , Burkholderia Pseudomallei 1026B | QVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEFPYTPSPPEHHHHH |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2011-06-23 Deposition Author(s): Bhargava, A.K. , Carfi, A. , Cohen, G.H. , Di Giovine, P. , Eisenberg, R.J. , Krummenacher, C. , Lou, H. , Luftig, M.A. , Settembre, E.C.