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3RR8

Ternary structure of the large fragment of taq dna polymerase bound to an abasic site and a ddgtp

PDB DOI: 10.2210/pdb3rr8/pdb

Classification: TRANSFERASE/DNA
Organism(s): Thermus Aquaticus , Synthetic Construct

Deposited: 2011-04-29
Deposition Author(s): Diederichs, K. , Marx, A. , Obeid, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.4 Å

Literature

Ternary structure of the large fragment of taq dna polymerase bound to an abasic site and a ddgtp

Diederichs, K. , Marx, A. , Obeid, S.

Primary Citation of Related Structures: 3RR8


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase I, thermostable A 540 Thermus Aquaticus , Synthetic Construct ALEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
(5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DDG))-3') b 12 NA GACCACGGCGCG
(5'-D(*AP*AP*AP*(3DR)P*CP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3') c 16 NA AAANCGCGCCGTGGTC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2011-04-29
Deposition Author(s): Diederichs, K. , Marx, A. , Obeid, S.