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3RJF

Ternary complex of dna polymerase beta with a gapped dna containing (syn)8odg at template position paired with non-hydrolyzable datp analog (dapcpp)

PDB DOI: 10.2210/pdb3rjf/pdb

Classification: Transferase, Lyase/DNA
Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2011-04-15
Deposition Author(s): Batra, V.K. , Beard, W.A. , Wilson, S.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.3 Å

Literature

Ternary complex of dna polymerase beta with a gapped dna containing (syn)8odg at template position paired with non-hydrolyzable datp analog (dapcpp)

Batra, V.K. , Beard, W.A. , Wilson, S.H.

Primary Citation of Related Structures: 3RJF


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase beta A 335 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*CP*CP*GP*AP*CP*(8OG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') t 16 NA CCGACGTCGCATCAGC
DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3') p 10 NA GCTGATGCGA
DNA (5'-D(P*GP*TP*CP*GP*G)-3') d 5 NA GTCGG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2011-04-15
Deposition Author(s): Batra, V.K. , Beard, W.A. , Wilson, S.H.