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FASTA Sequence PDB Format mmCIF Format
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3RBD

Dpo4 extension ternary complex with 3'-terminal primer c base opposite the 3-methylcytosine (m3c) lesion

PDB DOI: 10.2210/pdb3rbd/pdb

Classification: TRANSFERASE/DNA
Organism(s): Sulfolobus Solfataricus , Synthetic Construct

Deposited: 2011-03-29
Deposition Author(s): Patel, D.J. , Rechkoblit, O.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.502 Å

3rbd
Literature

Dpo4 extension ternary complex with 3'-terminal primer c base opposite the 3-methylcytosine (m3c) lesion

Patel, D.J. , Rechkoblit, O.

Primary Citation of Related Structures: 3RBD


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase IV A 341 Sulfolobus Solfataricus , Synthetic Construct GIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFI
DNA polymerase IV B 341 Sulfolobus Solfataricus , Synthetic Construct GIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFI

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3') d 13 NA GTTGGATGGTAGC
DNA (5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3') h 13 NA GTTGGATGGTAGC
DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3') e 20 NA CCTAACXCTACCATCCAACC
DNA (5'-D(*C*CP*TP*AP*AP*CP*(ME6)P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3') j 20 NA CCTAACXCTACCATCCAACC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2011-03-29
Deposition Author(s): Patel, D.J. , Rechkoblit, O.