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FASTA Sequence PDB Format mmCIF Format
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3RAF

Quinazolinedione-dna cleavage complex of type iv topoisomerase from s. pneumoniae

PDB DOI: 10.2210/pdb3raf/pdb

Classification: ISOMERASE/DNA/ANTIBIOTIC
Organism(s): Neovison Vison , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2011-03-28
Deposition Author(s): Fisher, L.M. , Laponogov, I. , Mcauley, K.E. , Pan, X.-S. , Sanderson, M.R. , Veselkov, D.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.24 Å

3raf
Literature

Quinazolinedione-dna cleavage complex of type iv topoisomerase from s. pneumoniae

Fisher, L.M. , Laponogov, I. , Mcauley, K.E. , Pan, X.-S. , Sanderson, M.R. , Veselkov, D.A.

Primary Citation of Related Structures: 3RAF


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA topoisomerase 4 subunit A A 496 Neovison Vison , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKALEHHHHHH
DNA topoisomerase 4 subunit A B 496 Neovison Vison , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKALEHHHHHH
DNA topoisomerase 4 subunit B C 268 Neovison Vison , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MGHHHHHHHHHHSSGHIDDDDKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF
DNA topoisomerase 4 subunit B D 268 Neovison Vison , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MGHHHHHHHHHHSSGHIDDDDKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*CP*AP*TP*GP*AP*AP*T)-3' e 7 NA CATGAAT
5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*G)-3' f 11 NA AGTCATTCATG
5'-D(*CP*GP*TP*GP*CP*AP*T)-3' g 7 NA CGTGCAT
5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*G)-3' h 11 NA GACTATGCACG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2011-03-28
Deposition Author(s): Fisher, L.M. , Laponogov, I. , Mcauley, K.E. , Pan, X.-S. , Sanderson, M.R. , Veselkov, D.A.