PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

3RAD

Quinolone(clinafloxacin)-dna cleavage complex of type iv topoisomerase from s. pneumoniae

PDB DOI: 10.2210/pdb3rad/pdb

Classification: ISOMERASE/DNA/ANTIBIOTIC
Organism(s): Streptococcus Pneumoniae , Synthetic Construct

Deposited: 2011-03-28
Deposition Author(s): Fisher, L.M. , Laponogov, I. , Mcauley, K.E. , Pan, X.-S. , Sanderson, M.R. , Veselkov, D.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.35 Å

3rad
Literature

Quinolone(clinafloxacin)-dna cleavage complex of type iv topoisomerase from s. pneumoniae

Fisher, L.M. , Laponogov, I. , Mcauley, K.E. , Pan, X.-S. , Sanderson, M.R. , Veselkov, D.A.

Primary Citation of Related Structures: 3RAD


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA topoisomerase 4 subunit A A 496 Streptococcus Pneumoniae , Synthetic Construct MSNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKALEHHHHHH
DNA topoisomerase 4 subunit A B 496 Streptococcus Pneumoniae , Synthetic Construct MSNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKALEHHHHHH
DNA topoisomerase 4 subunit B C 268 Streptococcus Pneumoniae , Synthetic Construct MGHHHHHHHHHHSSGHIDDDDKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF
DNA topoisomerase 4 subunit B D 268 Streptococcus Pneumoniae , Synthetic Construct MGHHHHHHHHHHSSGHIDDDDKHMKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVF

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*CP*AP*TP*GP*AP*AP*T)-3' e 7 NA CATGAAT
5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*G)-3' f 11 NA AGTCATTCATG
5'-D(*CP*GP*TP*GP*CP*AP*T)-3' g 7 NA CGTGCAT
5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*G)-3' h 11 NA GACTATGCACG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2011-03-28
Deposition Author(s): Fisher, L.M. , Laponogov, I. , Mcauley, K.E. , Pan, X.-S. , Sanderson, M.R. , Veselkov, D.A.