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3PO5

Structure of a mutant of the large fragment of dna polymerase i from thermus auqaticus in complex with an abasic site and ddatp

PDB DOI: 10.2210/pdb3po5/pdb

Classification: TRANSFERASE/DNA
Organism(s): Thermus Aquaticus , Synthetic Construct

Deposited: 2010-11-22
Deposition Author(s): Diederichs, K. , Marx, A. , Obeid, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.39 Å

3po5
Literature

Structure of a mutant of the large fragment of dna polymerase i from thermus auqaticus in complex with an abasic site and ddatp

Diederichs, K. , Marx, A. , Obeid, S.

Primary Citation of Related Structures: 3PO5


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase I A 540 Thermus Aquaticus , Synthetic Construct ALEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQKELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERKAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(2DA))-3') b 12 NA GACCACGGCGCA
DNA (5'-D(P*(3DR)P*TP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3') c 13 NA NTGCGCCGTGGTC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2010-11-22
Deposition Author(s): Diederichs, K. , Marx, A. , Obeid, S.