3PNW
Crystal structure of the tudor domain of human tdrd3 in complex with an anti-tdrd3 fab
PDB DOI: 10.2210/pdb3pnw/pdb
Classification: PROTEIN BINDING/IMMUNE SYSTEM Organism(s): Homo Sapiens , Homo Sapiens, Synthetic Construct
Deposited: 2010-11-19 Deposition Author(s): Adams-Cioaba, M.A. , Arrowsmith, C.H. , Bountra, C. , Cossar, D. , Edwards, A.M. , Lam, R. , Loppnau, P. , Persson, H. , Ravichandran, M. , Sidhu, S.S. , Structural Genomics Consortium (Sgc) , Tempel, W. , Weigelt, J. , Wernimont, A.K.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.05 Å
Crystal structure of the tudor domain of human tdrd3 in complex with an anti-tdrd3 fab
Adams-Cioaba, M.A. , Arrowsmith, C.H. , Bountra, C. , Cossar, D. , Edwards, A.M. , Lam, R. , Loppnau, P. , Persson, H. , Ravichandran, M. , Sidhu, S.S. , Structural Genomics Consortium (Sgc) , Tempel, W. , Weigelt, J. , Wernimont, A.K.
Primary Citation of Related Structures: 3PNW
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| FAB light chain | A | 228 | Homo Sapiens , Homo Sapiens, Synthetic Construct | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHGPFYWLFTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECGGSDYKDDDDK |
| FAB light chain | D | 228 | Homo Sapiens , Homo Sapiens, Synthetic Construct | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHGPFYWLFTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECGGSDYKDDDDK |
| FAB light chain | G | 228 | Homo Sapiens , Homo Sapiens, Synthetic Construct | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHGPFYWLFTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECGGSDYKDDDDK |
| FAB light chain | J | 228 | Homo Sapiens , Homo Sapiens, Synthetic Construct | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHGPFYWLFTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECGGSDYKDDDDK |
| FAB light chain | M | 228 | Homo Sapiens , Homo Sapiens, Synthetic Construct | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHGPFYWLFTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECGGSDYKDDDDK |
| FAB light chain | P | 228 | Homo Sapiens , Homo Sapiens, Synthetic Construct | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHGPFYWLFTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECGGSDYKDDDDK |
| FAB light chain | S | 228 | Homo Sapiens , Homo Sapiens, Synthetic Construct | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHGPFYWLFTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECGGSDYKDDDDK |
| FAB light chain | V | 228 | Homo Sapiens , Homo Sapiens, Synthetic Construct | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQHGPFYWLFTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGECGGSDYKDDDDK |
| FAB heavy chain | B | 246 | Homo Sapiens , Homo Sapiens, Synthetic Construct | EISEVQLVESGGGLVQPGGSLRLSCAASGFNLSSSYMHWVRQAPGKGLEWVASISSSYGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARTVRGSKKPYFSGWAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTGGSHHHHHH |
| FAB heavy chain | E | 246 | Homo Sapiens , Homo Sapiens, Synthetic Construct | EISEVQLVESGGGLVQPGGSLRLSCAASGFNLSSSYMHWVRQAPGKGLEWVASISSSYGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARTVRGSKKPYFSGWAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTGGSHHHHHH |
| FAB heavy chain | H | 246 | Homo Sapiens , Homo Sapiens, Synthetic Construct | EISEVQLVESGGGLVQPGGSLRLSCAASGFNLSSSYMHWVRQAPGKGLEWVASISSSYGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARTVRGSKKPYFSGWAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTGGSHHHHHH |
| FAB heavy chain | K | 246 | Homo Sapiens , Homo Sapiens, Synthetic Construct | EISEVQLVESGGGLVQPGGSLRLSCAASGFNLSSSYMHWVRQAPGKGLEWVASISSSYGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARTVRGSKKPYFSGWAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTGGSHHHHHH |
| FAB heavy chain | N | 246 | Homo Sapiens , Homo Sapiens, Synthetic Construct | EISEVQLVESGGGLVQPGGSLRLSCAASGFNLSSSYMHWVRQAPGKGLEWVASISSSYGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARTVRGSKKPYFSGWAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTGGSHHHHHH |
| FAB heavy chain | Q | 246 | Homo Sapiens , Homo Sapiens, Synthetic Construct | EISEVQLVESGGGLVQPGGSLRLSCAASGFNLSSSYMHWVRQAPGKGLEWVASISSSYGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARTVRGSKKPYFSGWAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTGGSHHHHHH |
| FAB heavy chain | T | 246 | Homo Sapiens , Homo Sapiens, Synthetic Construct | EISEVQLVESGGGLVQPGGSLRLSCAASGFNLSSSYMHWVRQAPGKGLEWVASISSSYGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARTVRGSKKPYFSGWAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTGGSHHHHHH |
| FAB heavy chain | W | 246 | Homo Sapiens , Homo Sapiens, Synthetic Construct | EISEVQLVESGGGLVQPGGSLRLSCAASGFNLSSSYMHWVRQAPGKGLEWVASISSSYGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARTVRGSKKPYFSGWAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTGGSHHHHHH |
| Tudor domain-containing protein 3 | C | 77 | Homo Sapiens , Homo Sapiens, Synthetic Construct | GPEKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTEAWEE |
| Tudor domain-containing protein 3 | F | 77 | Homo Sapiens , Homo Sapiens, Synthetic Construct | GPEKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTEAWEE |
| Tudor domain-containing protein 3 | I | 77 | Homo Sapiens , Homo Sapiens, Synthetic Construct | GPEKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTEAWEE |
| Tudor domain-containing protein 3 | L | 77 | Homo Sapiens , Homo Sapiens, Synthetic Construct | GPEKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTEAWEE |
| Tudor domain-containing protein 3 | O | 77 | Homo Sapiens , Homo Sapiens, Synthetic Construct | GPEKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTEAWEE |
| Tudor domain-containing protein 3 | R | 77 | Homo Sapiens , Homo Sapiens, Synthetic Construct | GPEKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTEAWEE |
| Tudor domain-containing protein 3 | U | 77 | Homo Sapiens , Homo Sapiens, Synthetic Construct | GPEKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTEAWEE |
| Tudor domain-containing protein 3 | X | 77 | Homo Sapiens , Homo Sapiens, Synthetic Construct | GPEKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTEAWEE |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2010-11-19 Deposition Author(s): Adams-Cioaba, M.A. , Arrowsmith, C.H. , Bountra, C. , Cossar, D. , Edwards, A.M. , Lam, R. , Loppnau, P. , Persson, H. , Ravichandran, M. , Sidhu, S.S. , Structural Genomics Consortium (Sgc) , Tempel, W. , Weigelt, J. , Wernimont, A.K.