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3OJS

Snapshots of the large fragment of dna polymerase i from thermus aquaticus processing c5 modified thymidines

PDB DOI: 10.2210/pdb3ojs/pdb

Classification: Transferase/DNA
Organism(s): Thermus Aquaticus , Synthetic Construct

Deposited: 2010-08-23
Deposition Author(s): Diederichs, K. , Marx, A. , Obeid, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.9 Å

Literature

Snapshots of the large fragment of dna polymerase i from thermus aquaticus processing c5 modified thymidines

Diederichs, K. , Marx, A. , Obeid, S.

Primary Citation of Related Structures: 3OJS


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase I, thermostable A 540 Thermus Aquaticus , Synthetic Construct ALEEAPWPPPEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAPEPYKALRDLKEARGLLAKDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSERLFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWLSAKE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3') b 12 NA GACCACGGCGCC
DNA (5'-D(*AP*AP*AP*AP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3') c 16 NA AAAAGGCGCCGTGGTC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2010-08-23
Deposition Author(s): Diederichs, K. , Marx, A. , Obeid, S.