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FASTA Sequence PDB Format mmCIF Format
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3NVK

Structural basis for substrate placement by an archaeal box c/d ribonucleoprotein particle

PDB DOI: 10.2210/pdb3nvk/pdb

Classification: TRANSFERASE/RNA
Organism(s): Pyrococcus Furiosus , Synthetic Construct

Deposited: 2010-07-08
Deposition Author(s): Li, H. , Wang, R. , Xue, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.209 Å

3nvk
Literature

Structural basis for substrate placement by an archaeal box c/d ribonucleoprotein particle

Li, H. , Wang, R. , Xue, S.

Primary Citation of Related Structures: 3NVK


Proteins
Molecule Chains Sequence Length Organism Sequence
NOP5/NOP56 related protein A 376 Pyrococcus Furiosus , Synthetic Construct MHHHHHHVMIMKAFISENVRGIYAFDENGNLIEKRYFTDKPEKVLDQLLKGEITKDLEELLNSLKEKGYDEFVFEHPELSRRAKELGFSATTEFPNIAGERLRSNPEEFLGENWFEEYYKVGVALTRMRIQEQSGARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPELDELLPKHPQYVAFVKTVGHRDNINEEVLRELGLSEEKIKKILEAKEKTMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVGAKLAARLISLAGGLRELAMMPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEARIRLVL
NOP5/NOP56 related protein F 376 Pyrococcus Furiosus , Synthetic Construct MHHHHHHVMIMKAFISENVRGIYAFDENGNLIEKRYFTDKPEKVLDQLLKGEITKDLEELLNSLKEKGYDEFVFEHPELSRRAKELGFSATTEFPNIAGERLRSNPEEFLGENWFEEYYKVGVALTRMRIQEQSGARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPELDELLPKHPQYVAFVKTVGHRDNINEEVLRELGLSEEKIKKILEAKEKTMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVGAKLAARLISLAGGLRELAMMPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEARIRLVL
50S ribosomal protein L7Ae E 129 Pyrococcus Furiosus , Synthetic Construct MHHHHHHAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELMK
50S ribosomal protein L7Ae H 129 Pyrococcus Furiosus , Synthetic Construct MHHHHHHAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELMK
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase I 234 Pyrococcus Furiosus , Synthetic Construct MHHHHHHMVEVKKHKFPGVYVVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERRNIIPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKRGGYGMIAVKSRSIDVTKEPEQVFKEVERELSEYFEVIERLNLEPYEKDHALFVVRKP
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase J 234 Pyrococcus Furiosus , Synthetic Construct MHHHHHHMVEVKKHKFPGVYVVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERRNIIPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKRGGYGMIAVKSRSIDVTKEPEQVFKEVERELSEYFEVIERLNLEPYEKDHALFVVRKP

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (5'-R(*GP*CP*CP*GP*UP*UP*GP*AP*AP*GP*CP*UP*CP*UP*GP*AP*CP*CP*GP*AP*AP*AP*GP*GP*CP*GP*UP*GP*AP*UP*GP*AP*GP*C)-3') k 34 NA GCCGUUGAAGCUCUGACCGAAAGGCGUGAUGAGC
RNA (5'-R(*GP*CP*CP*GP*UP*UP*GP*AP*AP*GP*CP*UP*CP*UP*GP*AP*CP*CP*GP*AP*AP*AP*GP*GP*CP*GP*UP*GP*AP*UP*GP*AP*GP*C)-3') l 34 NA GCCGUUGAAGCUCUGACCGAAAGGCGUGAUGAGC
RNA (5'-R(*GP*AP*GP*CP*UP*UP*CP*AP*AP*CP*GP*GP*C)-3') g 13 NA GAGCUUCAACGGC
RNA (5'-R(*GP*AP*GP*CP*UP*UP*CP*AP*AP*CP*GP*GP*C)-3') s 13 NA GAGCUUCAACGGC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2010-07-08
Deposition Author(s): Li, H. , Wang, R. , Xue, S.