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FASTA Sequence PDB Format mmCIF Format
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3NMU

Crystal structure of substrate-bound halfmer box c/d rnp

PDB DOI: 10.2210/pdb3nmu/pdb

Classification: Transferase/RNA
Organism(s): Pyrococcus Furiosus , Synthetic Construct

Deposited: 2010-06-22
Deposition Author(s): Li, H. , Wang, R. , Xue, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.729 Å

Literature

Crystal structure of substrate-bound halfmer box c/d rnp

Li, H. , Wang, R. , Xue, S.

Primary Citation of Related Structures: 3NMU


Proteins
Molecule Chains Sequence Length Organism Sequence
NOP5/NOP56 related protein A 379 Pyrococcus Furiosus , Synthetic Construct MHHHHHHVMIMKAFISENVRGIYAFDENGNLIEKRYFTDKPEKVLDQLLKGEITKDLEELLNSLKEKGYDEFVFEHPELSRRAKELGFSATTEFPNIAGERLRSNPEEFLGENWFEEYYKVGVALTRMRIQEQSGARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPELDELLPKHPQYVAFVKTVGHRDNINEEVLRELGLSEEKIKKILEAKEKTMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVGAKLAARLISLAGGLRELAMMPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEARIREIKEKY
NOP5/NOP56 related protein B 379 Pyrococcus Furiosus , Synthetic Construct MHHHHHHVMIMKAFISENVRGIYAFDENGNLIEKRYFTDKPEKVLDQLLKGEITKDLEELLNSLKEKGYDEFVFEHPELSRRAKELGFSATTEFPNIAGERLRSNPEEFLGENWFEEYYKVGVALTRMRIQEQSGARDKMVIQAIEALDDVDKVINLLVARLREWYSLHFPELDELLPKHPQYVAFVKTVGHRDNINEEVLRELGLSEEKIKKILEAKEKTMGAWMDQTDIEVVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVGAKLAARLISLAGGLRELAMMPSSTIQVLGAEKALFRHLRTGAKPPKHGVIYQYPAINRSPWWQRGKIARALAGKLAIAARVDYFSGEYIAEELKKELEARIREIKEKY
50S ribosomal protein L7Ae C 129 Pyrococcus Furiosus , Synthetic Construct MHHHHHHAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELMK
50S ribosomal protein L7Ae G 129 Pyrococcus Furiosus , Synthetic Construct MHHHHHHAKPSYVKFEVPKELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEKEIPYIYVPSKKELGAAAGIEVAAASVAIIEPGKARDLVEEIAMKVKELMK
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase F 234 Pyrococcus Furiosus , Synthetic Construct MHHHHHHMVEVKKHKFPGVYVVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERRNIIPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKRGGYGMIAVKSRSIDVTKEPEQVFKEVERELSEYFEVIERLNLEPYEKDHALFVVRKP
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase J 234 Pyrococcus Furiosus , Synthetic Construct MHHHHHHMVEVKKHKFPGVYVVIDDDGSEKIATKNLVPGQRVYGERVIKWEGEEYRIWNPHRSKLGAAIVNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERRNIIPILGDATKPEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKRGGYGMIAVKSRSIDVTKEPEQVFKEVERELSEYFEVIERLNLEPYEKDHALFVVRKP

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (34-MER) d 34 NA GCCGUUGAAGCUCUGACCGAAAGGCGUGAUGAGC
RNA (34-MER) e 34 NA GCCGUUGAAGCUCUGACCGAAAGGCGUGAUGAGC
RNA (5'-R(*GP*AP*GP*CP*UP*UP*CP*AP*AP*CP*GP*GP*C)-3') i 13 NA GAGCUUCAACGGC
RNA (5'-R(*GP*AP*GP*CP*UP*UP*CP*AP*AP*CP*GP*GP*C)-3') k 13 NA GAGCUUCAACGGC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2010-06-22
Deposition Author(s): Li, H. , Wang, R. , Xue, S.