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3NKB

A 1.9a crystal structure of the hdv ribozyme precleavage suggests both lewis acid and general acid mechanisms contribute to phosphodiester cleavage

PDB DOI: 10.2210/pdb3nkb/pdb

Classification: DNA, RNA
Organism(s): N.A.

Deposited: 2010-06-18
Deposition Author(s): Bevilacqua, P.C. , Chadalavada, D.M. , Chase, E. , Chen, J.-H. , Golden, B.L. , Yajima, R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.916 Å

3nkb
Literature

A 1.9a crystal structure of the hdv ribozyme precleavage suggests both lewis acid and general acid mechanisms contribute to phosphodiester cleavage

Bevilacqua, P.C. , Chadalavada, D.M. , Chase, E. , Chen, J.-H. , Golden, B.L. , Yajima, R.

Primary Citation of Related Structures: 3NKB


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA/RNA (5'-D(*(DUR))-D(*GP*G)-R(P*CP*UP*UP*GP*CP*A)-3') a 9 NA XGGCUUGCA
The hepatitis delta virus ribozyme b 64 NA GGUCCGCAGCCUCCUCGCGGCGCAAGCUGGGCAACAUUCCGAAAGGUAAUGGCGAAUGCGGACC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2010-06-18
Deposition Author(s): Bevilacqua, P.C. , Chadalavada, D.M. , Chase, E. , Chen, J.-H. , Golden, B.L. , Yajima, R.