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FASTA Sequence PDB Format mmCIF Format
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3NIC

Dna binding and cleavage by the giy-yig endonuclease r.eco29ki inactive variant y49f

PDB DOI: 10.2210/pdb3nic/pdb

Classification: HYDROLASE/DNA
Organism(s): Escherichia Coli , Synthetic Construct

Deposited: 2010-06-15
Deposition Author(s): Lambert, A.R. , Mak, A.N.S. , Stoddard, B.L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.8 Å

3nic
Literature

Dna binding and cleavage by the giy-yig endonuclease r.eco29ki inactive variant y49f

Lambert, A.R. , Mak, A.N.S. , Stoddard, B.L.

Primary Citation of Related Structures: 3NIC


Proteins
Molecule Chains Sequence Length Organism Sequence
Eco29kIR A 235 Escherichia Coli , Synthetic Construct MASSHHHHHHSSGLVPRGSSMGHNKKFDRSEHVYRNDSFLELIKDAVRFFSGTPVHSLPPPERFQGAGVFALYYTGHYSLYDEYSRINRKAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCRFVIFEATGSDMISTVEAALIKIYKPLWNTVVDGFGNHTPGAGRFAQAKSDWDVIHPGREWAEKCTGVHSEPYFIEERIKQYFSKSNFT
Eco29kIR B 235 Escherichia Coli , Synthetic Construct MASSHHHHHHSSGLVPRGSSMGHNKKFDRSEHVYRNDSFLELIKDAVRFFSGTPVHSLPPPERFQGAGVFALYYTGHYSLYDEYSRINRKAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCRFVIFEATGSDMISTVEAALIKIYKPLWNTVVDGFGNHTPGAGRFAQAKSDWDVIHPGREWAEKCTGVHSEPYFIEERIKQYFSKSNFT
Eco29kIR C 235 Escherichia Coli , Synthetic Construct MASSHHHHHHSSGLVPRGSSMGHNKKFDRSEHVYRNDSFLELIKDAVRFFSGTPVHSLPPPERFQGAGVFALYYTGHYSLYDEYSRINRKAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCRFVIFEATGSDMISTVEAALIKIYKPLWNTVVDGFGNHTPGAGRFAQAKSDWDVIHPGREWAEKCTGVHSEPYFIEERIKQYFSKSNFT
Eco29kIR D 235 Escherichia Coli , Synthetic Construct MASSHHHHHHSSGLVPRGSSMGHNKKFDRSEHVYRNDSFLELIKDAVRFFSGTPVHSLPPPERFQGAGVFALYYTGHYSLYDEYSRINRKAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCRFVIFEATGSDMISTVEAALIKIYKPLWNTVVDGFGNHTPGAGRFAQAKSDWDVIHPGREWAEKCTGVHSEPYFIEERIKQYFSKSNFT
Eco29kIR E 235 Escherichia Coli , Synthetic Construct MASSHHHHHHSSGLVPRGSSMGHNKKFDRSEHVYRNDSFLELIKDAVRFFSGTPVHSLPPPERFQGAGVFALYYTGHYSLYDEYSRINRKAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCRFVIFEATGSDMISTVEAALIKIYKPLWNTVVDGFGNHTPGAGRFAQAKSDWDVIHPGREWAEKCTGVHSEPYFIEERIKQYFSKSNFT
Eco29kIR F 235 Escherichia Coli , Synthetic Construct MASSHHHHHHSSGLVPRGSSMGHNKKFDRSEHVYRNDSFLELIKDAVRFFSGTPVHSLPPPERFQGAGVFALYYTGHYSLYDEYSRINRKAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCRFVIFEATGSDMISTVEAALIKIYKPLWNTVVDGFGNHTPGAGRFAQAKSDWDVIHPGREWAEKCTGVHSEPYFIEERIKQYFSKSNFT
Eco29kIR G 235 Escherichia Coli , Synthetic Construct MASSHHHHHHSSGLVPRGSSMGHNKKFDRSEHVYRNDSFLELIKDAVRFFSGTPVHSLPPPERFQGAGVFALYYTGHYSLYDEYSRINRKAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCRFVIFEATGSDMISTVEAALIKIYKPLWNTVVDGFGNHTPGAGRFAQAKSDWDVIHPGREWAEKCTGVHSEPYFIEERIKQYFSKSNFT
Eco29kIR H 235 Escherichia Coli , Synthetic Construct MASSHHHHHHSSGLVPRGSSMGHNKKFDRSEHVYRNDSFLELIKDAVRFFSGTPVHSLPPPERFQGAGVFALYYTGHYSLYDEYSRINRKAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCRFVIFEATGSDMISTVEAALIKIYKPLWNTVVDGFGNHTPGAGRFAQAKSDWDVIHPGREWAEKCTGVHSEPYFIEERIKQYFSKSNFT

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3') m 22 NA CGGGAGGCCCGCGGGCCGCCGC
DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3') i 22 NA CGGGAGGCCCGCGGGCCGCCGC
DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3') k 22 NA CGGGAGGCCCGCGGGCCGCCGC
DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3') o 22 NA CGGGAGGCCCGCGGGCCGCCGC
DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3') n 22 NA GCGGCGGCCCGCGGGCCTCCCG
DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3') j 22 NA GCGGCGGCCCGCGGGCCTCCCG
DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3') l 22 NA GCGGCGGCCCGCGGGCCTCCCG
DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3') p 22 NA GCGGCGGCCCGCGGGCCTCCCG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2010-06-15
Deposition Author(s): Lambert, A.R. , Mak, A.N.S. , Stoddard, B.L.