Dna binding and cleavage by the giy-yig endonuclease r.eco29ki inactive variant y49f
PDB DOI: 10.2210/pdb3nic/pdb
Classification: HYDROLASE/DNA Organism(s): Escherichia Coli , Synthetic Construct
Deposited: 2010-06-15 Deposition Author(s): Lambert, A.R. , Mak, A.N.S. , Stoddard, B.L.
Dna binding and cleavage by the giy-yig endonuclease r.eco29ki inactive variant y49f
Lambert, A.R. , Mak, A.N.S. , Stoddard, B.L.
Primary Citation of Related Structures: 3NIC
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
Eco29kIR | A | 235 | Escherichia Coli , Synthetic Construct | MASSHHHHHHSSGLVPRGSSMGHNKKFDRSEHVYRNDSFLELIKDAVRFFSGTPVHSLPPPERFQGAGVFALYYTGHYSLYDEYSRINRKAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCRFVIFEATGSDMISTVEAALIKIYKPLWNTVVDGFGNHTPGAGRFAQAKSDWDVIHPGREWAEKCTGVHSEPYFIEERIKQYFSKSNFT |
Eco29kIR | B | 235 | Escherichia Coli , Synthetic Construct | MASSHHHHHHSSGLVPRGSSMGHNKKFDRSEHVYRNDSFLELIKDAVRFFSGTPVHSLPPPERFQGAGVFALYYTGHYSLYDEYSRINRKAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCRFVIFEATGSDMISTVEAALIKIYKPLWNTVVDGFGNHTPGAGRFAQAKSDWDVIHPGREWAEKCTGVHSEPYFIEERIKQYFSKSNFT |
Eco29kIR | C | 235 | Escherichia Coli , Synthetic Construct | MASSHHHHHHSSGLVPRGSSMGHNKKFDRSEHVYRNDSFLELIKDAVRFFSGTPVHSLPPPERFQGAGVFALYYTGHYSLYDEYSRINRKAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCRFVIFEATGSDMISTVEAALIKIYKPLWNTVVDGFGNHTPGAGRFAQAKSDWDVIHPGREWAEKCTGVHSEPYFIEERIKQYFSKSNFT |
Eco29kIR | D | 235 | Escherichia Coli , Synthetic Construct | MASSHHHHHHSSGLVPRGSSMGHNKKFDRSEHVYRNDSFLELIKDAVRFFSGTPVHSLPPPERFQGAGVFALYYTGHYSLYDEYSRINRKAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCRFVIFEATGSDMISTVEAALIKIYKPLWNTVVDGFGNHTPGAGRFAQAKSDWDVIHPGREWAEKCTGVHSEPYFIEERIKQYFSKSNFT |
Eco29kIR | E | 235 | Escherichia Coli , Synthetic Construct | MASSHHHHHHSSGLVPRGSSMGHNKKFDRSEHVYRNDSFLELIKDAVRFFSGTPVHSLPPPERFQGAGVFALYYTGHYSLYDEYSRINRKAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCRFVIFEATGSDMISTVEAALIKIYKPLWNTVVDGFGNHTPGAGRFAQAKSDWDVIHPGREWAEKCTGVHSEPYFIEERIKQYFSKSNFT |
Eco29kIR | F | 235 | Escherichia Coli , Synthetic Construct | MASSHHHHHHSSGLVPRGSSMGHNKKFDRSEHVYRNDSFLELIKDAVRFFSGTPVHSLPPPERFQGAGVFALYYTGHYSLYDEYSRINRKAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCRFVIFEATGSDMISTVEAALIKIYKPLWNTVVDGFGNHTPGAGRFAQAKSDWDVIHPGREWAEKCTGVHSEPYFIEERIKQYFSKSNFT |
Eco29kIR | G | 235 | Escherichia Coli , Synthetic Construct | MASSHHHHHHSSGLVPRGSSMGHNKKFDRSEHVYRNDSFLELIKDAVRFFSGTPVHSLPPPERFQGAGVFALYYTGHYSLYDEYSRINRKAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCRFVIFEATGSDMISTVEAALIKIYKPLWNTVVDGFGNHTPGAGRFAQAKSDWDVIHPGREWAEKCTGVHSEPYFIEERIKQYFSKSNFT |
Eco29kIR | H | 235 | Escherichia Coli , Synthetic Construct | MASSHHHHHHSSGLVPRGSSMGHNKKFDRSEHVYRNDSFLELIKDAVRFFSGTPVHSLPPPERFQGAGVFALYYTGHYSLYDEYSRINRKAYNLPIYVGKAVPAGWRQSRISDHETRAGSELSNRIREHGRNIAKTSNLDLCDFSCRFVIFEATGSDMISTVEAALIKIYKPLWNTVVDGFGNHTPGAGRFAQAKSDWDVIHPGREWAEKCTGVHSEPYFIEERIKQYFSKSNFT |
Nucleic Acids / Hybrid | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3') | m | 22 | NA | CGGGAGGCCCGCGGGCCGCCGC |
DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3') | i | 22 | NA | CGGGAGGCCCGCGGGCCGCCGC |
DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3') | k | 22 | NA | CGGGAGGCCCGCGGGCCGCCGC |
DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3') | o | 22 | NA | CGGGAGGCCCGCGGGCCGCCGC |
DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3') | n | 22 | NA | GCGGCGGCCCGCGGGCCTCCCG |
DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3') | j | 22 | NA | GCGGCGGCCCGCGGGCCTCCCG |
DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3') | l | 22 | NA | GCGGCGGCCCGCGGGCCTCCCG |
DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3') | p | 22 | NA | GCGGCGGCCCGCGGGCCTCCCG |
Method: X-RAY DIFFRACTION
Deposited Date: 2010-06-15 Deposition Author(s): Lambert, A.R. , Mak, A.N.S. , Stoddard, B.L.