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FASTA Sequence PDB Format mmCIF Format
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3KHR

Dpo4 post-extension ternary complex with the correct c opposite the 2-aminofluorene-guanine [af]g lesion

PDB DOI: 10.2210/pdb3khr/pdb

Classification: TRANSFERASE/DNA
Organism(s): Sulfolobus Solfataricus P2 , Synthetic Construct

Deposited: 2009-10-30
Deposition Author(s): Malinina, L. , Patel, D.J. , Rechkoblit, O.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.01 Å

Literature

Dpo4 post-extension ternary complex with the correct c opposite the 2-aminofluorene-guanine [af]g lesion

Malinina, L. , Patel, D.J. , Rechkoblit, O.

Primary Citation of Related Structures: 3KHR


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase IV A 341 Sulfolobus Solfataricus P2 , Synthetic Construct GIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFI
DNA polymerase IV B 341 Sulfolobus Solfataricus P2 , Synthetic Construct GIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIRELDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYNEPIRTRVRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFI

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*CP*(DDG))-3' d 13 NA TTGGATGGTAGCG
5'-D(*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*CP*(DDG))-3' h 13 NA TTGGATGGTAGCG
5'-D(*CP*C*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3' e 19 NA CTAACGCTACCATCCAACC
5'-D(*CP*C*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3' j 19 NA CTAACGCTACCATCCAACC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2009-10-30
Deposition Author(s): Malinina, L. , Patel, D.J. , Rechkoblit, O.