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3JY1

Bacillus cereus alkylpurine dna glycosylase alkd bound to dna containing an abasic site (across from c)

PDB DOI: 10.2210/pdb3jy1/pdb

Classification: hydrolase/DNA
Organism(s): Vibrio Cholerae Serotype O1 (Strain Atcc 39541 / Classical Ogawa 395 / O395) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2009-09-21
Deposition Author(s): Eichman, B.F. , Rubinson, E.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.754 Å

3jy1
Literature

Bacillus cereus alkylpurine dna glycosylase alkd bound to dna containing an abasic site (across from c)

Eichman, B.F. , Rubinson, E.H.

Primary Citation of Related Structures: 3JY1


Proteins
Molecule Chains Sequence Length Organism Sequence
alkylpurine DNA glycosylase AlkD A 226 Vibrio Cholerae Serotype O1 (Strain Atcc 39541 / Classical Ogawa 395 / O395) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) PMHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKDIIQIHTLPDQKDFQIIIRELWDLPEREFQAAALDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQNNELAPLSKREAIKHIKQNY

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*TP*GP*GP*GP*(3DR)P*GP*GP*CP*TP*T)-3') b 10 NA TGGGNGGCTT
DNA (5'-D(*AP*AP*AP*GP*CP*CP*CP*CP*CP*C)-3') c 10 NA AAAGCCCCCC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2009-09-21
Deposition Author(s): Eichman, B.F. , Rubinson, E.H.