3JWD
Structure of hiv-1 gp120 with gp41-interactive region: layered architecture and basis of conformational mobility
PDB DOI: 10.2210/pdb3jwd/pdb
Classification: VIRAL PROTEIN Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1
Deposited: 2009-09-18 Deposition Author(s): Ban, Y.A. , Chen, L. , Huang, C.C. , Kong, L. , Kwon, Y.D. , Kwong, P.D. , Majeed, S. , Pancera, M. , Robinson, J.E. , Schief, W.R. , Sodroski, J. , Stuckey, J. , Wyatt, R. , Zhou, T.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.61 Å
Structure of hiv-1 gp120 with gp41-interactive region: layered architecture and basis of conformational mobility
Ban, Y.A. , Chen, L. , Huang, C.C. , Kong, L. , Kwon, Y.D. , Kwong, P.D. , Majeed, S. , Pancera, M. , Robinson, J.E. , Schief, W.R. , Sodroski, J. , Stuckey, J. , Wyatt, R. , Zhou, T.
Primary Citation of Related Structures: 3JWD
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| HIV-1 GP120 ENVELOPE GLYCOPROTEIN | A | 379 | Homo Sapiens , Human Immunodeficiency Virus 1 | TEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTGGSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSSQLLLNGSLAEEEVVIRSVNFTDNAKTIIVQLNTSVEINCTGAGHCNIARAKWNNTLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHWFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQSEKS |
| HIV-1 GP120 ENVELOPE GLYCOPROTEIN | B | 379 | Homo Sapiens , Human Immunodeficiency Virus 1 | TEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTGGSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSSQLLLNGSLAEEEVVIRSVNFTDNAKTIIVQLNTSVEINCTGAGHCNIARAKWNNTLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHWFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQSEKS |
| T-cell surface glycoprotein CD4 | C | 184 | Homo Sapiens , Human Immunodeficiency Virus 1 | MKKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS |
| T-cell surface glycoprotein CD4 | D | 184 | Homo Sapiens , Human Immunodeficiency Virus 1 | MKKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS |
| FAB 48D LIGHT CHAIN | L | 213 | Homo Sapiens , Human Immunodeficiency Virus 1 | DIQMTQSPSSVSASVGDRVTITCRASQDISTWLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTDFSLTINSLQPEDFATYYCQQANSFFTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKLYACEVTHQGLSSPVTKSFNRGEC |
| FAB 48D LIGHT CHAIN | O | 213 | Homo Sapiens , Human Immunodeficiency Virus 1 | DIQMTQSPSSVSASVGDRVTITCRASQDISTWLAWYQQKPGKAPKLLIYAASTLQSGVPSRFSGSGSGTDFSLTINSLQPEDFATYYCQQANSFFTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKLYACEVTHQGLSSPVTKSFNRGEC |
| FAB 48D HEAVY CHAIN | H | 220 | Homo Sapiens , Human Immunodeficiency Virus 1 | EVQLVQSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSEDTAVYYCAADPWELNAFNVWGQGTLVSVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK |
| FAB 48D HEAVY CHAIN | P | 220 | Homo Sapiens , Human Immunodeficiency Virus 1 | EVQLVQSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSEDTAVYYCAADPWELNAFNVWGQGTLVSVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2009-09-18 Deposition Author(s): Ban, Y.A. , Chen, L. , Huang, C.C. , Kong, L. , Kwon, Y.D. , Kwong, P.D. , Majeed, S. , Pancera, M. , Robinson, J.E. , Schief, W.R. , Sodroski, J. , Stuckey, J. , Wyatt, R. , Zhou, T.