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3JPT

Ternary complex of dna polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-fluoro chloro methylene triphosphate

PDB DOI: 10.2210/pdb3jpt/pdb

Classification: Transferase/DNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2009-09-04
Deposition Author(s): Batra, V.K. , Beard, W.A. , Goodman, M.F. , Kashmerov, B. , Mckenna, C.E. , Upton, J. , Wilson, S.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å

3jpt
Literature

Ternary complex of dna polymerase beta with a dideoxy terminated primer and 2'-deoxyguanosine 5'-beta, gamma-fluoro chloro methylene triphosphate

Batra, V.K. , Beard, W.A. , Goodman, M.F. , Kashmerov, B. , Mckenna, C.E. , Upton, J. , Wilson, S.H.

Primary Citation of Related Structures: 3JPT


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase beta A 335 Homo Sapiens , Synthetic Construct MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(P*GP*TP*CP*GP*G)-3' d 5 NA GTCGG
5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*(DOC))-3' p 10 NA GCTGATGCGC
5'-D(*CP*CP*GP*AP*CP*CP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3' t 16 NA CCGACCGCGCATCAGC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2009-09-04
Deposition Author(s): Batra, V.K. , Beard, W.A. , Goodman, M.F. , Kashmerov, B. , Mckenna, C.E. , Upton, J. , Wilson, S.H.