3JD7
The novel asymmetric entry intermediate of a picornavirus captured with nanodiscs
PDB DOI: 10.2210/pdb3jd7/pdb
Classification: VIRUS Organism(s): Coxsackievirus B3
Deposited: 2016-04-29 Deposition Author(s): Ashley, R.E. , Conway, J.F. , Hafenstein, S. , Lee, H. , Makhov, A.M. , Organtini, L.J. , Shingler, K.L.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.9 Å
The novel asymmetric entry intermediate of a picornavirus captured with nanodiscs
Ashley, R.E. , Conway, J.F. , Hafenstein, S. , Lee, H. , Makhov, A.M. , Organtini, L.J. , Shingler, K.L.
Primary Citation of Related Structures: 3JD7
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Capsid protein VP1 | 1 | 281 | Coxsackievirus B3 | GPVEDAITAAIGRVADTVGTGPTNSEAIPALTAAETGHTSQVVPSDTMQTRHVKNYHSRSESTIENFLCRSACVYFTEYENSGAKRYAEWVITPRQAAQLRRKLEFFTYVRFDLELTFVITSTQQPSTTQNQDAQILTHQIMYVPPGGPVPDKVDSYVWQTSTNPSVFWTEGNAPPRMSVPFLSIGNAYSNFYDGWSEFSRNGVYGINTLNNMGTLYARHVNAGSTGPIKSTIRIYFKPKHVKAWIPRPPRLCQYEKAKNVNFQPSGVTTTRQSITTMTNT |
| Capsid protein VP2 | 2 | 263 | Coxsackievirus B3 | SPTVEECGYSDRVRSITLGNSTITTQECANVVVGYGVWPDYLKDSEATAEDQPTQPDVATCRFYTLDSVQWQKTSPGWWWKLPDALSNLGLFGQNMQYHYLGRTGYTIHVQCNASKFHQGCLLVVCVPEAEMGCATLNNTPSSAELLGGDTAKEFADKPVASGSNKLVQRVVYNAGMGVGVGNLTIFPHQWINLRTNNSATIVMPYTNSVPMDNMFRHNNVTLMVIPFVPLDYCPGSTTYVPITVTIAPMCAEYNGLRLAGHQ |
| Capsid protein VP3 | 3 | 238 | Coxsackievirus B3 | GLPTMNTPGSCQFLTSDDFQSPSAMPQYDVTPEMRIPGEVKNLMEIAEVDSVVPVQNVGEKVNSMEAYQIPVRSNEGSGTQVFGFPLQPGYSSVFSRTLLGEILNYYTHWSGSIKLTFMFCGSAMATGKFLLAYSPPGAGAPTKRVDAMLGTHVVWDVGLQSSCVLCIPWISQTHYRYVASDEYTAGGFITCWYQTNIVVPADAQSSCYIMCFVSACNDFSVRLLKDTPFISQENFFQ |
| Capsid protein VP4 | 4 | 68 | Coxsackievirus B3 | GAQVSTQKTGAHETGLNASGNSIIHYTNINYYKDAASNSANRQDFTQDPSKFTEPVKDIMIKSLPALN |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2016-04-29 Deposition Author(s): Ashley, R.E. , Conway, J.F. , Hafenstein, S. , Lee, H. , Makhov, A.M. , Organtini, L.J. , Shingler, K.L.