3JD5
Cryo-em structure of the small subunit of the mammalian mitochondrial ribosome
PDB DOI: 10.2210/pdb3jd5/pdb
Classification: RIBOSOME Organism(s): Bos Taurus
Deposited: 2016-04-08 Deposition Author(s): Agrawal, R.K. , Booth, T.M. , Haque, E.M. , Kaushal, P.S. , Sanbonmatsu, K.Y. , Sharma, M.R. , Spremulli, L.L. , Tung, C.S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 7.0 Å
Cryo-em structure of the small subunit of the mammalian mitochondrial ribosome
Agrawal, R.K. , Booth, T.M. , Haque, E.M. , Kaushal, P.S. , Sanbonmatsu, K.Y. , Sharma, M.R. , Spremulli, L.L. , Tung, C.S.
Primary Citation of Related Structures: 3JD5
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 28S ribosomal protein S22, mitochondrial | A | 359 | Bos Taurus | MATLRVSLSLWNLHAGSRGAGRVYFRARARPRPGDLFQPLPGVCGAGTPCRGLCSEAESGSPKIKKPTFMDEEVQSILIKMTGLDLLKIFKPAVQETKPPTYKLMTQAQLEEATRQAIEAAKVRLKMPPVLEERTPINDVLAEDKILEGTETGKYVFTDISYSIPHRERFIVVREPSGTLRKASWEERDRMIQIYFPKEGRRVLTPVIFREENLQTMYSQDRHVDVLNLCVAQFEPDSADYIKVHHQTYEDIDKYGKYDLLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVDDAASLVQLYHILHPDGQSAQEAKEQAAEGLQLIKVFAKTEAQKGAYIELTLQAYQEAFISSSAAS |
| 28S ribosomal protein S12, mitochondrial | L | 139 | Bos Taurus | MSWSGLLRGLSMSLNYGLALAPRPWGTRPMATLNQLHRRGPPKFPPSKPGPTEGRPQLKGVVLRTFIRKPKKPNSANRKCCRVRLSTGREAVCFIPGEGHNLQEHHVVLVQGGRTQDLPGVKLKVVRGKYDCGHVQKKK |
| Aurora kinase A interacting protein 1 | N | 199 | Bos Taurus | MFLMRLTSQLLRAVPRAGCSGPWPVLGVLGRHACRPCYSTKPTGPSGVASLPGRRVHMELEEMLVPRKMSISPLESWLTIRYLLPRLDTGAPGTVSPAQLYECPPSRVGEGVEQGGKDVFDAPQMQCRNVLKIRRRKMNHHKYRKLVKRTRFLRRKVREARLKRKQMKFERDLRRIWQKAGLKEAPPGWQTPKIYLKGK |
| Pentatricopeptide repeat domain-containing protein 3, mitochondrial | O | 575 | Bos Taurus | MASVASARWLRVSCGLCVPLTARRAGPCGRTPSSRFYSGSAAVPKDEGADIAGTEEVVIPKKKTWDKVAVLQALASTVHRDTTAAPYAFQDDPYLIPTSSVESHSFLLAKKSGENAAKFIINSYPKYFQKDIAEPHIPCLMPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLATYHHIIQLFYXXXXXXXXXXXXXXMFFQSAMRVCSSLRDLELAYQVHGLLNTGDNRKFIGPDPRRNFYYSKFFSLLCLMEQIDVTLKWYKDLIPSVFFPHSQTLIDLLQALDVANRLEMIPQIWKDSKEYGHTFRSDLKEEILMLMARDQHPPELQAAFADCAADIKSTYESQDARQTASEWPANSLNYIAILFLRAGRTQEAWKMLGLFRKHNKIPRNELLNEFMDSAKASSSPAQAVEVVKLANSFSLPICEGLTQRLTADFTLSQEQKEALGDLTALTSDSESDSDSDTSKDK |
| 28S ribosomal protein S18b, mitochondrial | P | 258 | Bos Taurus | MAASVLNVLLRRLPYFSPFRGAYGVQVPLQTLCTKAPPEDDSLPPIPVSPYEDEPWKYLDSEEYHNRNGSRPVWADYRRNHKGGIPPQRTRKMCIRGNKVAGNPCPICRDQKLHVDFRNVKLLKQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARDHGLLSYHIPQVEPRDLDFSTSHGAVSATPPAPTLVSGDPWYPWYSWKQPPERELSRLRRLYQGHLREESGPPPESMPKVPLTAPNEATSTEQAGPQSAL |
| 28S ribosomal protein S17, mitochondrial | Q | 130 | Bos Taurus | MSVVRSSVHAKWIVGKVIGTAMQKTAKVRVTRLVLDPYLLKYFNKRKTYFAHDALQQCTVGDIVLLKALPVPRTKHVKHELAEIVFKVGQVVDPVTGKRCAGTTYLESPVDLETTPLAKNLEELSLSTTQ |
| 28S ribosomal protein S18c, mitochondrial | R | 143 | Bos Taurus | MAAVLGLCGGLGKRKFTRFPTAFVCLTNSGTRAVLWRSCSQCKQVTSSEDLPIPMENPYKEPLKKCILCEKRVDYKNVQLLSQFISPFTGCIYGRHITGLCGKKQREITKAIKRAQILGFMPVTYKDPAYLKDPKVCNIRYRE |
| 28S ribosomal protein S21, mitochondrial | U | 87 | Bos Taurus | MAKHLKFIARTVMVQEGNVEGAYRTLNRILTMDGLIEDIKRRRYYEKPCRRRQRESYETCRRIYNMEMARKINFLMRKNRADPWQGC |
| 28S ribosomal protein S2, mitochondrial | B | 293 | Bos Taurus | MATGAVLPRLLGAGVRAAPRGRAAQRGRTLGSAAAAAAREPERDSDRSARILSEPLKHSDFFNVKELFSVRSLFNARVHLGHKAGCRHRFMEPYIFGSRLGQDIIDLEQTATHLQLALNFTAHVAFRGGIILFVSRARQFSHLIESTARSCGEYAHTRYFKGGLLTNAPLLLGARVRLPDLIIFLHTLNNVFEPHVAVRDAAKMSIPTVGVVDTNCNPCLITYPVPGNDDSPPAVQLFCQLFQTAVTRAKEKRRQLEALYRLQGAPGPHPANPAAPGAPSPGAQAQLGMGHSP |
| 28S ribosomal protein S24, mitochondrial | C | 167 | Bos Taurus | MVALYCGGGLRPLMLSWSRDLPCIWRALHTSAVCFKNRAARVRVGKGNKPVTYEEAHAPHYIAHRKGWLSLHTGNLDGEDHAAERTVEDVFLRKFMLGTFPGCLADQLILKRRANQVEICALVLRQLPAHKFYFLVGYSETLLSHFYKCPVRLHLQTVPSKVVYKYI |
| 28S ribosomal protein S26, mitochondrial | D | 205 | Bos Taurus | MLRALSTLGARPLGRPPAQFLLLARGRKTRHDPPAKSKIGRVATPPAVDPAEFFVLTERYRQYRQTVRALRQEFVTEVRRKVHEARAGVLAERKALQDAAEHRELMAWNQAENQRLHELRMARLRQEAREQEQWQAEEAAREAREAEAWARLKEQEVLQLQEDAKNFITRENLEARVEEALDSPKSYNWAVTREGQVVTPQHKGS |
| 28S ribosomal protein S5, mitochondrial | E | 430 | Bos Taurus | MAAAVRAAGFLPALCGASAGRLWSRQLYLNTFPTASIWALKAVPSNGPSSSAGARGRCRSTHLGPALQTQCCTPAPGNVTAQQYRSYSFFTKLTADELWKGALAETGAGARKGRGKRTKRKRRKDLNRGQIIGEGRRGFLWPGLNAPLMKSGAIQTITQRSKEEQEKVEADMVQQREEWDRKRKMKVKRERGWSGNSWGGISLGPPDPGPNGETYDDFDTRILEVRNVFNMTAKEGRKRSVRVLVAVGNGRGAAGFAIGKATERADAFRKAKNRAVHYLHYIERYEDHTIYHDISLTFKRTHIKMKKQPRGYGLRCHRAITTICRLIGIKDMYAKVSGSVNMLSLTRGLFQGLSRQETHQQLADKKSLHVVEFREECGPLPIVVASPQGALRKDPEPEDEVPDIKLDWDDVKAVQGMKRSVWSGLKRAAT |
| 28S ribosomal protein S6, mitochondrial | F | 124 | Bos Taurus | MPRYELALILKAMQRPETAAALKRTLEALMDRGAVVRSLENLGERTLPYKMSAHSQRHTRGGYFLVDFYAPTTTVASIMEHLSRDIDVIRPNVVKHPLTQEVKECEGIVPVPLEEKLYSTKKRK |
| 28S ribosomal protein S7, mitochondrial | G | 242 | Bos Taurus | MAAPTAKVSRGWSGLALGVRIAVLRLPGLTQVRWSRYGPEYQDPQIDKEYYRKPLAQLTEEETYERELRKTQVIKAAPATKTSSVFEDPVISKFTNMMMKGGNKILARSLMTQTLEAVKRKQFEKYHAASAEEQATVERNPYTIFHQALKNCEPVIGLVPILKGGHFYQVPVPLAERRRRFLAMKWMITECREKKPRRMLMPEKLSQELLEAFCNRGPVIKRKHDMHKMAEANRALAHYRWW |
| 28S ribosomal protein S31, mitochondrial | H | 386 | Bos Taurus | MFPRVSAVLPFRPLSRLPLCSAGPEASAATVVPLASPHGTVRTKCNIQRYFGTNSVIYSKKDDKSVPACEISKETENQGSTKENKKKDLVNIIKGMKVELSTVNVQTTKPPNRGQLKSLEAAIRRLQKSPEDAPQKSKSLSPELVAAATAVADSLPFDKQTTKSELLRQLRQHEEDSKAQKDGEKPKISFSNIISDMKVARSSTARASTRPVHQIQFDEGADDFVDREETADLRKRFRKNIFKGKRLNIFELKPVTEEAPETEAAPSLWDVEFAKQLAAVTEQPFQNGFEEMIQWTKEGKLWEFPINNEAGFDDDGSEFHEHIFLDKYLEGFPKQGPIRHFMELVTCGLSKNPYLSVKQKVEHIEWFRNYFNEKQDILKESGINFS |
| 28S ribosomal protein S9, mitochondrial | I | 396 | Bos Taurus | MAAPSVSCGAAVPYRLFLAGRVSFAREQGLWKAAASGLQTGTRCQILRLKHSPAVTTTKNVAALRRESYTVDFIKKQIEEFNIGKRHLANMMGEDPETFTQEDVDRAITYLFPSGLFEKRARPIMKHPEEIFPKQRAVQWGEDGRPFHFLFYTGKQSYYSLMHEAYGKVLHAEERQDQLRAKGLFSEKSKSKDLIGSRWLIKEELEEMLVEKLSDQDYAQFIRLLERLSALPCDAAEEEFVGRFRRTVTVQSKKHLIEPLQYDEQGMAFSTGQGKRKTANAEAVVYGHGSGKIEINGVDYLLYFPVTQDREQLMFPFHFLDRLGKHDVTCTVSGGGRSSQAGAIRLAMSRALCSFITEDEVEWMRQAGLLTTDPRVRERKKPGQEGARRKFTWKKR |
| 28S ribosomal protein S10, mitochondrial | J | 201 | Bos Taurus | MAVRAVFGALGRRLWQGSKNFSVSSSRSNIAKNDGFLLSTSMKWVQFSNLHVDVPKDLTKPTITISDEPDTLYKRLSVLVKGHDKAVLDSYEYFAVLAAKELGISVKVHEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELEHLTGSTADVYLEYIQRNLPEGVAMEVTKTRLEQLPEHIKKPVWETTPEEKGDSKS |
| 28S ribosomal protein S11, mitochondrial | K | 197 | Bos Taurus | MQVLRNSGSWLLRSWAWPPTTRVVAGVPAPTIHMSAQQMQDAAAKEEVEKAETPAPAPSRSSFSIYPPIPGQESSLRWAGKKFEEIPIAHIKASYNNTQIHVVSAAHQPLARASCGTEGFRNAKKGTGIAAQTAGIAAAAKATGKGVTHVRVVVKGLGPGRLSAIKGLTMGGLEVISITDNTPIPHNGCRPRKARRL |
| Coiled-coil-helix-coiled-coil-helix domain containing 1 | M | 118 | Bos Taurus | MATPSLRGRLARLGNPRKPILKPNKPLILANHVGERRREKGEATCITEMSIMMACWKQNEFRDEACKKEIRDFFDCASRAEAARKMRSIQEDLGELGSLPPRKLNKLLQRFPNKPHLS |
| unknown | S | 17 | Bos Taurus | XXXXXXXXXXXXXXXXX |
| unknown | Z | 17 | Bos Taurus | XXXXXXXXXXXXXXXXX |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2016-04-08 Deposition Author(s): Agrawal, R.K. , Booth, T.M. , Haque, E.M. , Kaushal, P.S. , Sanbonmatsu, K.Y. , Sharma, M.R. , Spremulli, L.L. , Tung, C.S.