3JCU
Cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom resolution
PDB DOI: 10.2210/pdb3jcu/pdb
Classification: MEMBRANE PROTEIN Organism(s): Spinacia Oleracea
Deposited: 2016-03-10 Deposition Author(s): Cao, P. , Chang, W.R. , Li, M. , Liu, X.Y. , Liu, Z.F. , Su, X.D. , Wei, X.P. , Zhang, X.Z.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.2 Å
Cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom resolution
Cao, P. , Chang, W.R. , Li, M. , Liu, X.Y. , Liu, Z.F. , Su, X.D. , Wei, X.P. , Zhang, X.Z.
Primary Citation of Related Structures: 3JCU
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem II protein D1 | A | 344 | Spinacia Oleracea | MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLA |
| Photosystem II reaction center protein J | J | 40 | Spinacia Oleracea | MADTTGRIPLWIIGTVAGILVIGLVGIFFYGSYSGLGSSL |
| Photosystem II reaction center protein K | K | 59 | Spinacia Oleracea | MLNIFSLICLNSALYSSSFFFGKLPEAYAFLSPIVDFMPVIPLFFFLLAFVWQAAVSFR |
| Protein Photosystem II reaction center protein L | L | 38 | Spinacia Oleracea | MTQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN |
| Photosystem II reaction center protein M | M | 34 | Spinacia Oleracea | MEVNILAFIATALFILVPTAFLLIIYVKTVSQND |
| Oxygen-evolving enhancer protein 1, chloroplastic | O | 332 | Spinacia Oleracea | MAASLQASTTFLQPTKVASRNTLQLRSTQNVCKAFGVESASSGGRLSLSLQSDLKELANKCVDATKLAGLALATSALIASGANAEGGKRLTYDEIQSKTYLEVKGTGTANQCPTVEGGVDSFAFKPGKYTAKKFCLEPTKFAVKAEGISKNSGPDFQNTKLMTRLTYTLDEIEGPFEVSSDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPESFSGDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENNKNVASSKGTITLSVTSSKPETGEVIGVFQSLQPSDTDLGAKVPKDVKIEGVWYAQLEQQ |
| Oxygen-evolving enhancer protein 2, chloroplastic | P | 267 | Spinacia Oleracea | MASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDDNEANVLNSGVSRRLALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKKNTEFMPYNGDGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQVDYLLGKQAYFGKTDSEGGFDSGVVASANVLESSTPVVDGKQYYSITVLTRTADGDEGGKHQVIAATVKDGKLYICKAQAGDKRWFKGAKKFVESATSSFSVA |
| Oxygen-evolving enhancer protein 3, chloroplastic | Q | 232 | Spinacia Oleracea | MAQAMASMAGLRGASQAVLEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSAEAETSRRAMLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKLG |
| Chlorophyll A-B Binding protein 29 kD (CP29) | R | 243 | Spinacia Oleracea | AQPKSGFSTDRPLWYPGAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDTEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLSDPLHTTILDRFL |
| Chlorophyll A-B Binding protein 26 kD (CP26) | S | 295 | Spinacia Oleracea | MASVAASTAAACLGKSELLGNSLNLRSATSAPCSTPSVGPCKIVALFNFGKKAATPPAKSKAKVAVASPADDELAKWYGPDRRIFLPDGLLDRDDIPEYLNGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLGAAGCVIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFSMFAFFIQAYVTGQGPVENLSAHLSDPFGNNLLTVIGGAAERVPTL |
| Photosystem II Reaction Center protein Tc | T | 33 | Spinacia Oleracea | MEALVYTFLLVSTLGIIFFAIFFREPPKISTKK |
| Photosystem II CP47 reaction center protein | B | 508 | Spinacia Oleracea | MGLPWYRVHTVVLNDPGRLISVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITDPGIWSYEGVAGAHIMFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGVACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQPVSPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSAGLAENQSFSEAWSKIPEKLAFYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPIFRDKEGRELFVRRMPTFFETFPVVLIDGDGIVRADVPFRRAESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGSRTLFRDVFAGIDPDLDVQVEFGAFQKIGDPTTRRQGV |
| Photosystem II Reaction Center Tn protein | U | 99 | Spinacia Oleracea | MASITMTASFLGTTVSKQPPTHHLRRGVVMAKAMPETTTTTKEETSSKRRDLVFAVAAAAACSVARIAMAEEPKRGTPEAKKKYAPVCVTMPSARICYK |
| Photosystem II reaction center W protein, chloroplastic | W | 137 | Spinacia Oleracea | MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYASGLEEDEESGLSL |
| Photosystem II Reaction Center X protein | X | 117 | Spinacia Oleracea | MASISAVSMATPITTTTTKTTFFSPLPVVKPQRATLMGQKPRAMGLKVQASLKEKAVTGLTAAALTASMMVPDVAEAAELAPSLKNFLFSIAAGGVVLTAIVGAVVAVSNFDPVKRA |
| Photosystem II reaction center protein Z | Z | 62 | Spinacia Oleracea | MTIAFQLAVFALIATSSILLISVPVVFASPDGWSSNKNIVFSGTSLWLGLVFLVGILNSLIS |
| Photosystem II CP43 reaction center protein | C | 473 | Spinacia Oleracea | MKTLYSLRRFYPVETLFNGTLTLAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGCLLKSPFGGEGWIVSVDDLEDIIGGHVWIGVICILGGIWHILTKPFAWARRALVWSGEAYLSYSLAALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLSTSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN |
| Photosystem II D2 protein | D | 353 | Spinacia Oleracea | MTIAVGKFTKDEKDLFDSMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWAFVALHGAFALIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 83 | Spinacia Oleracea | MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF |
| Cytochrome b559 subunit beta | F | 39 | Spinacia Oleracea | MTIDRTYPIFTVRWLAIHGLAVPTVFFLGSISAMQFIQR |
| Chlorophyll a-b binding protein, chloroplastic | G | 267 | Spinacia Oleracea | MASSTMALSSPSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK |
| Chlorophyll a-b binding protein, chloroplastic | N | 267 | Spinacia Oleracea | MASSTMALSSPSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK |
| Chlorophyll a-b binding protein, chloroplastic | Y | 267 | Spinacia Oleracea | MASSTMALSSPSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK |
| Photosystem II reaction center protein H | H | 73 | Spinacia Oleracea | MATQTVESSSRSRPKPTTVGALLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEIYNSSVLLDGISMN |
| Protein Photosystem II reaction center protein I | I | 36 | Spinacia Oleracea | MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2016-03-10 Deposition Author(s): Cao, P. , Chang, W.R. , Li, M. , Liu, X.Y. , Liu, Z.F. , Su, X.D. , Wei, X.P. , Zhang, X.Z.