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FASTA Sequence PDB Format mmCIF Format
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3JCA

Core model of the mouse mammary tumor virus intasome

PDB DOI: 10.2210/pdb3jca/pdb

Classification: VIRAL PROTEIN
Organism(s): Mouse Mammary Tumor Virus , Synthetic Construct

Deposited: 2015-11-24
Deposition Author(s): Ballandras-Colas, A. , Brown, M. , Cherepanov, P. , Cook, N.J. , Demeler, B. , Dewdney, T.G. , Engelman, A.N. , Lyumkis, D.L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.8 Å

3jca
Literature

Core model of the mouse mammary tumor virus intasome

Ballandras-Colas, A. , Brown, M. , Cherepanov, P. , Cook, N.J. , Demeler, B. , Dewdney, T.G. , Engelman, A.N. , Lyumkis, D.L.

Primary Citation of Related Structures: 3JCA


Proteins
Molecule Chains Sequence Length Organism Sequence
Integrase A 265 Mouse Mammary Tumor Virus , Synthetic Construct ALESAQESHALHHQNAAALRFQFHITREQAREIVKLCPNCPDWGHAPQLGVNPRGLKPRVLWQMDVTHVSEFGKLKYVHVTVDTYSHFTFATARTGEATKDVLQHLAQSFAYMGIPQKIKTDNAPAYVSRSIQEFLARWKISHVTGIPYNPQGQAIVERTHQNIKAQLNKLQKAGKYYTPHHLLAHALFVLNHVNMDNQGHTAAERHWGPISADPKPMVMWKDLLTGSWKGPDVLITAGRGYACVFPQDAESPIWVPDRFIRPFT
Integrase B 265 Mouse Mammary Tumor Virus , Synthetic Construct ALESAQESHALHHQNAAALRFQFHITREQAREIVKLCPNCPDWGHAPQLGVNPRGLKPRVLWQMDVTHVSEFGKLKYVHVTVDTYSHFTFATARTGEATKDVLQHLAQSFAYMGIPQKIKTDNAPAYVSRSIQEFLARWKISHVTGIPYNPQGQAIVERTHQNIKAQLNKLQKAGKYYTPHHLLAHALFVLNHVNMDNQGHTAAERHWGPISADPKPMVMWKDLLTGSWKGPDVLITAGRGYACVFPQDAESPIWVPDRFIRPFT
Integrase E 265 Mouse Mammary Tumor Virus , Synthetic Construct ALESAQESHALHHQNAAALRFQFHITREQAREIVKLCPNCPDWGHAPQLGVNPRGLKPRVLWQMDVTHVSEFGKLKYVHVTVDTYSHFTFATARTGEATKDVLQHLAQSFAYMGIPQKIKTDNAPAYVSRSIQEFLARWKISHVTGIPYNPQGQAIVERTHQNIKAQLNKLQKAGKYYTPHHLLAHALFVLNHVNMDNQGHTAAERHWGPISADPKPMVMWKDLLTGSWKGPDVLITAGRGYACVFPQDAESPIWVPDRFIRPFT
Integrase F 265 Mouse Mammary Tumor Virus , Synthetic Construct ALESAQESHALHHQNAAALRFQFHITREQAREIVKLCPNCPDWGHAPQLGVNPRGLKPRVLWQMDVTHVSEFGKLKYVHVTVDTYSHFTFATARTGEATKDVLQHLAQSFAYMGIPQKIKTDNAPAYVSRSIQEFLARWKISHVTGIPYNPQGQAIVERTHQNIKAQLNKLQKAGKYYTPHHLLAHALFVLNHVNMDNQGHTAAERHWGPISADPKPMVMWKDLLTGSWKGPDVLITAGRGYACVFPQDAESPIWVPDRFIRPFT
Integrase C 49 Mouse Mammary Tumor Virus , Synthetic Construct PMVMWKDLLTGSWKGPDVLITAGRGYACVFPQDAESPIWVPDRFIRPFT
Integrase D 49 Mouse Mammary Tumor Virus , Synthetic Construct PMVMWKDLLTGSWKGPDVLITAGRGYACVFPQDAESPIWVPDRFIRPFT
Integrase G 49 Mouse Mammary Tumor Virus , Synthetic Construct PMVMWKDLLTGSWKGPDVLITAGRGYACVFPQDAESPIWVPDRFIRPFT
Integrase H 49 Mouse Mammary Tumor Virus , Synthetic Construct PMVMWKDLLTGSWKGPDVLITAGRGYACVFPQDAESPIWVPDRFIRPFT

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D(*AP*AP*TP*GP*CP*CP*GP*CP*AP*GP*TP*CP*GP*GP*CP*CP*GP*AP*CP*CP*TP*G)-3' i 22 NA AATGCCGCAGTCGGCCGACCTG
5'-D(*AP*AP*TP*GP*CP*CP*GP*CP*AP*GP*TP*CP*GP*GP*CP*CP*GP*AP*CP*CP*TP*G)-3' k 22 NA AATGCCGCAGTCGGCCGACCTG
5'-D(*CP*AP*GP*GP*TP*CP*GP*GP*CP*CP*GP*AP*CP*TP*GP*CP*GP*GP*CP*A)-3' j 20 NA CAGGTCGGCCGACTGCGGCA
5'-D(*CP*AP*GP*GP*TP*CP*GP*GP*CP*CP*GP*AP*CP*TP*GP*CP*GP*GP*CP*A)-3' l 20 NA CAGGTCGGCCGACTGCGGCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2015-11-24
Deposition Author(s): Ballandras-Colas, A. , Brown, M. , Cherepanov, P. , Cook, N.J. , Demeler, B. , Dewdney, T.G. , Engelman, A.N. , Lyumkis, D.L.