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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

3JB3

Atomic model of cytoplasmic polyhedrosis virus with sam, gtp and atp

PDB DOI: 10.2210/pdb3jb3/pdb

Classification: VIRUS
Organism(s): Bombyx Mori Cypovirus 1

Deposited: 2015-07-06
Deposition Author(s): Jiang, J.S. , Sun, J.C. , Yu, X.K. , Zhou, Z.H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Literature

Atomic model of cytoplasmic polyhedrosis virus with sam, gtp and atp

Jiang, J.S. , Sun, J.C. , Yu, X.K. , Zhou, Z.H.

Primary Citation of Related Structures: 3JB3


Proteins
Molecule Chains Sequence Length Organism Sequence
Structural protein VP3 A 1058 Bombyx Mori Cypovirus 1 MWHYTSINNDTRVALDPKPNQIRTITKPNTVPQLGTDYLYTFNSQRRSHTLRLLGPFQYFNFSETDRGHPLFRLPLKYPSKAIPADELIDNLHSWMRSVHLLHVRSEDNTLRYNWMLGVYARSTNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGIDYIDIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSSWHWNVLHTFHYRSESDMIDHFAAKILEDWRQKEKLDKGALVEADRVIQRLIPLSSSTYVQRLAAIGALYPNEFTENVLDLSRLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNILLYPYTYIFTTIPTSMNYISNTGQGRIKHSLTVTGATEHDTVADIVLGQTGEDVITISMVEPMSIAVEDMYGYVLDTPTRDIWPADEQIEQKGDAVALYDTKTSRALGMFNNTVRIDDLLSPLLSLVYRTYIKGDTMTMTQGSLDHLTLCAAVDSDITFVGNRMIAPLPEGYIPKPMHRNNSTMKMLSLYVALKKLENFATNSYLMAPDTSIILLGAEREPAVNILRRFNRNVSNVRIIGMGDRAVEPNIRVRVPFPIDKNISADFIICDINSYEDQSFESMFSETISVVTTCASAATRALVKINHPSEYMINSVIERLSQLGGVFYHTALLKTASQNPYSYETYIYITPIAAAVRFPFYSNSAMINRYMTAVADDEMPIIPSIHTVIKGHSNTYSPGLFCGCVDVQSAPLALSQLKSYCSEATTWRVDSDDNLVNIIARIDPARIALEFRTRSNTSAYHEYQRYVPNGLGFKVRKTREFRYMHREVTFIHKLMMYALIREQISLTENMTQVVSIGGRNLADISVVPLNMKYVVIDPATRIETLTQEKKNIEVQSRPFQFDAANMDLENNSIYLFIAVIMNEPNGAATPARMQMDKIRNVATAMLTRTNCVAYISFYEAGIITRLDQSTAHKTIRVEEGRLKVANYVPVDTLVEADVTLMLRDIGITHEIIRPSTPELIDACSNYGIRLGSTGGAVLDVFNHYSPVIKLVRS
Capsid protein VP1 B 1333 Bombyx Mori Cypovirus 1 MHSTNNNSNKRNNEEKHKQPEIDSSANNGEGTSGTRAQTVGDTATEAGVRNETEAGASTRRQTDGTGLSGTNAKIATASSARQADVEKPADVTFTIENVDDVGIMQQKKPPTVVQSRTDVFNEQFANEALHPTTKVIFNGLDVNTEVQPLSDDFKQISDPKGYLTYSVKYEDQFTKKDKLRASEADDRIVGPTVNLFKYGAAVVNIDLNRDFFDTATGIDLTKGIPLVQDLLVPIGVTAGAEQSAEYVSGLLMVLFKVMTDNRLVIVGETTTPMSNTLSTVVNNVLRTTYHNNVGVNPALLRDFTQVNWLNRDITNMLQQAGTKYGLGLTETRLDYVRLVKTIVGHALNIDHFAASVLNINLRALMEANVTADDRIKALQAHSMISTQFHGPNQGALRPELAFDHDHIIRCLMLAAANYPRLEGIIVQINTGYVASANVIRPVSEKRYFPENLEQNQSAARLVSAVKARASEADISSIHLAIAREVSPMFNVHELKKIAESFEDPSSIVVVLEFILFALFFPTEFNRIKGDIQNVLLLFFSRWYPVEYGIFVQRGATYTINAAGEFEFSGRNEKWDQALYLSEHFPALFSDVPLAGANTIIAIMRLFTPQGFLRTDDLAIAANFPRASRNPQTYIPYTNQRGTVTNEFASRFRTIVATLANVVNERAVQDDMQKATRSCTKQWLRHLETQFDNIAVAHTDHLSVVYATMSNFMLNFTNNFSGNHATFKPDQYVITSPEGSYKPIIERQGETVDGLTIIDTSIVWPILCQCTYPLVRQSGKGVDAVSIMEEIVYPDPSTTLSQSLSVAQVLSKLTLPDAFINMILSGGDSVVMRTYQTEADDDLDEGIRMTTYDQYLSHIRERLHITNVPDPIYITGASTPDQIAASVQATHVAVVLYQSGVINGPASTYLRENEVLVVMPDYYDVVSRFANANLQMNNNRYHESVLEIADIFDQADFIQTSDAVRQLRALMPTLSTSQIRHAIERIAQITDVDSTDYGKLTLRFLGTLTRSLKMQNAQIRRIRPDGTVLRYDDQIDIEAFRWSRYFLDELQLRRLSVGLRLITNPRIARRFNGVRIMYLTDDDPDPDFVPDVPEGYVAVQYAHRLFSSSLANKRNRVTYTHPPTGMAYPSPTGRPHVHMTINERAGMSKLVADNIIASVIKSNWVVDILDIEYTAEVMTPSEGYTQHVDAESIMTAPKGKLFHLQFMDGLLRPEPSAFDPPASGEDMRLIYPLQPISVARSMRAIVNHNEVDRPRGAVAPSSYEMDTGTLSRNGDLLYSPVANGQVGIPKLEVDHISFSNVVSMMTANIRTGDDMAVERVNPDDVRAINIRNA
Capsid protein VP1 C 1333 Bombyx Mori Cypovirus 1 MHSTNNNSNKRNNEEKHKQPEIDSSANNGEGTSGTRAQTVGDTATEAGVRNETEAGASTRRQTDGTGLSGTNAKIATASSARQADVEKPADVTFTIENVDDVGIMQQKKPPTVVQSRTDVFNEQFANEALHPTTKVIFNGLDVNTEVQPLSDDFKQISDPKGYLTYSVKYEDQFTKKDKLRASEADDRIVGPTVNLFKYGAAVVNIDLNRDFFDTATGIDLTKGIPLVQDLLVPIGVTAGAEQSAEYVSGLLMVLFKVMTDNRLVIVGETTTPMSNTLSTVVNNVLRTTYHNNVGVNPALLRDFTQVNWLNRDITNMLQQAGTKYGLGLTETRLDYVRLVKTIVGHALNIDHFAASVLNINLRALMEANVTADDRIKALQAHSMISTQFHGPNQGALRPELAFDHDHIIRCLMLAAANYPRLEGIIVQINTGYVASANVIRPVSEKRYFPENLEQNQSAARLVSAVKARASEADISSIHLAIAREVSPMFNVHELKKIAESFEDPSSIVVVLEFILFALFFPTEFNRIKGDIQNVLLLFFSRWYPVEYGIFVQRGATYTINAAGEFEFSGRNEKWDQALYLSEHFPALFSDVPLAGANTIIAIMRLFTPQGFLRTDDLAIAANFPRASRNPQTYIPYTNQRGTVTNEFASRFRTIVATLANVVNERAVQDDMQKATRSCTKQWLRHLETQFDNIAVAHTDHLSVVYATMSNFMLNFTNNFSGNHATFKPDQYVITSPEGSYKPIIERQGETVDGLTIIDTSIVWPILCQCTYPLVRQSGKGVDAVSIMEEIVYPDPSTTLSQSLSVAQVLSKLTLPDAFINMILSGGDSVVMRTYQTEADDDLDEGIRMTTYDQYLSHIRERLHITNVPDPIYITGASTPDQIAASVQATHVAVVLYQSGVINGPASTYLRENEVLVVMPDYYDVVSRFANANLQMNNNRYHESVLEIADIFDQADFIQTSDAVRQLRALMPTLSTSQIRHAIERIAQITDVDSTDYGKLTLRFLGTLTRSLKMQNAQIRRIRPDGTVLRYDDQIDIEAFRWSRYFLDELQLRRLSVGLRLITNPRIARRFNGVRIMYLTDDDPDPDFVPDVPEGYVAVQYAHRLFSSSLANKRNRVTYTHPPTGMAYPSPTGRPHVHMTINERAGMSKLVADNIIASVIKSNWVVDILDIEYTAEVMTPSEGYTQHVDAESIMTAPKGKLFHLQFMDGLLRPEPSAFDPPASGEDMRLIYPLQPISVARSMRAIVNHNEVDRPRGAVAPSSYEMDTGTLSRNGDLLYSPVANGQVGIPKLEVDHISFSNVVSMMTANIRTGDDMAVERVNPDDVRAINIRNA
Viral structural protein 5 D 448 Bombyx Mori Cypovirus 1 MLQQPTGGYTTLEQFAFTIRNDGTNATPTQFLQLLSYEATENELVKKTIPTPETHLPSARNVPGNVYIEDAITQALFGISAQNVNAHGYFSRLSALALPNTSARLGLDGVIYNSETINIPFYDPAAVANFAATYAKLGNASTPRYRADMIDIYAHVGLELAGTDAERAAGVMPVKRAKFDSWEGSLISLSRDVVNWKILAFLIDLCSLEGEALRAFKTRNRDVFRMMLFIMSTAVAANVVNRKVTKRVDRVLEYIGVNSMRTAGRTATITYDLSRHEFAAKFLQLTFTRWNAASAMIRSMPDMHTPRTSITPAGENALVRHNRYMTENFKGLSPIALAQKKHEMMLHTHEIHSMDIDGSIKNMVERETVNKMNEIDAMNTAPWTEEFAEVEPTTVYERHQIGTDPEQTQLISQDAAVIVHQASSDVDENEYGNSVSELTIDTQSDSVL
Viral structural protein 5 E 448 Bombyx Mori Cypovirus 1 MLQQPTGGYTTLEQFAFTIRNDGTNATPTQFLQLLSYEATENELVKKTIPTPETHLPSARNVPGNVYIEDAITQALFGISAQNVNAHGYFSRLSALALPNTSARLGLDGVIYNSETINIPFYDPAAVANFAATYAKLGNASTPRYRADMIDIYAHVGLELAGTDAERAAGVMPVKRAKFDSWEGSLISLSRDVVNWKILAFLIDLCSLEGEALRAFKTRNRDVFRMMLFIMSTAVAANVVNRKVTKRVDRVLEYIGVNSMRTAGRTATITYDLSRHEFAAKFLQLTFTRWNAASAMIRSMPDMHTPRTSITPAGENALVRHNRYMTENFKGLSPIALAQKKHEMMLHTHEIHSMDIDGSIKNMVERETVNKMNEIDAMNTAPWTEEFAEVEPTTVYERHQIGTDPEQTQLISQDAAVIVHQASSDVDENEYGNSVSELTIDTQSDSVL
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2015-07-06
Deposition Author(s): Jiang, J.S. , Sun, J.C. , Yu, X.K. , Zhou, Z.H.