3JAB
Domain organization and conformational plasticity of the g protein effector, pde6
PDB DOI: 10.2210/pdb3jab/pdb
Classification: HYDROLASE/IMMUNE SYSTEM Organism(s): Bos Taurus , Mus Musculus
Deposited: 2015-05-26 Deposition Author(s): Agosto, M.A. , Baehr, W. , Baker, M.L. , Constantine, R. , He, F. , Schmid, M.F. , Wensel, T.G. , Zhang, Z.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 11.0 Å
Domain organization and conformational plasticity of the g protein effector, pde6
Agosto, M.A. , Baehr, W. , Baker, M.L. , Constantine, R. , He, F. , Schmid, M.F. , Wensel, T.G. , Zhang, Z.
Primary Citation of Related Structures: 3JAB
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| GafA domain of cone phosphodiesterase 6C | A | 180 | Bos Taurus , Mus Musculus | MRLEECNILFELLTEIQDEAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKETVFPLDIGIAGWVAHTKKFFNIPDVKKNNHFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLNASEFSKEDEEVFKKYLNFISLVLRLEHHHHHH |
| GafA domain of cone phosphodiesterase 6C | M | 180 | Bos Taurus , Mus Musculus | MRLEECNILFELLTEIQDEAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKETVFPLDIGIAGWVAHTKKFFNIPDVKKNNHFSDYLDKKTGYTTVNMMAIPITQGKEVLAVVMALNKLNASEFSKEDEEVFKKYLNFISLVLRLEHHHHHH |
| GafB domain of phosphodiesterase 2A | B | 185 | Bos Taurus , Mus Musculus | QKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQNELVAKVFDGGVVDDESYEIRIPADQGIAGHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDLATAFSIYCGISIAHSLLYKKVNEAQYRSHLANEMM |
| GafB domain of phosphodiesterase 2A | N | 185 | Bos Taurus , Mus Musculus | QKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQNELVAKVFDGGVVDDESYEIRIPADQGIAGHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDLATAFSIYCGISIAHSLLYKKVNEAQYRSHLANEMM |
| phosphodiesterase 5/6 chimera catalytic domain | C | 330 | Bos Taurus , Mus Musculus | GSHMEETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYCHSIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFWEQGDLERTVLQQQPIPMMDRNKRDELPKLQVGFIDFVCTQLYEALTHVSEDCFPLLDGCRKNRQKWQALAEQQ |
| phosphodiesterase 5/6 chimera catalytic domain | O | 330 | Bos Taurus , Mus Musculus | GSHMEETRELQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEVLCRWILSVKKNYRKNVAYHNWRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDHRGVNNSYIQRSEHPLAQLYCHSIMEHHHFDQCLMILNSPGNQILSGLSIEEYKTTLKIIKQAILATDLALYIKRRGEFFELIRKNQFNLEDPHQKELFLAMLMTACDLSAITKPWPIQQRIAELVATEFWEQGDLERTVLQQQPIPMMDRNKRDELPKLQVGFIDFVCTQLYEALTHVSEDCFPLLDGCRKNRQKWQALAEQQ |
| phosphodiesterase 6 gamma subunit inhibitory peptide | D | 18 | Bos Taurus , Mus Musculus | WEAFNHLELHELAQYGII |
| phosphodiesterase 6 gamma subunit inhibitory peptide | P | 18 | Bos Taurus , Mus Musculus | WEAFNHLELHELAQYGII |
| IgG1-kappa 2E8 light chain | L | 214 | Bos Taurus , Mus Musculus | DIVMTQSQKFMSTSVGDRVSITCKASQNVGTAVAWYQQKPGQSPKLMIYSASNRYTGVPDRFTGSGSGTDFTLTISNMQSEDLADYFCQQYSSYPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSATDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC |
| IgG1-kappa 2E8 light chain | R | 214 | Bos Taurus , Mus Musculus | DIVMTQSQKFMSTSVGDRVSITCKASQNVGTAVAWYQQKPGQSPKLMIYSASNRYTGVPDRFTGSGSGTDFTLTISNMQSEDLADYFCQQYSSYPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSATDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC |
| IgG1-kappa 2E8 heavy chain | H | 221 | Bos Taurus , Mus Musculus | EVQLQQSGAEVVRSGASVKLSCTASGFNIKDYYIHWVKQRPEKGLEWIGWIDPEIGDTEYVPKFQGKATMTADTSSNTAYLQLSSLTSEDTAVYYCNAGHDYDRGRFPYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRD |
| IgG1-kappa 2E8 heavy chain | Q | 221 | Bos Taurus , Mus Musculus | EVQLQQSGAEVVRSGASVKLSCTASGFNIKDYYIHWVKQRPEKGLEWIGWIDPEIGDTEYVPKFQGKATMTADTSSNTAYLQLSSLTSEDTAVYYCNAGHDYDRGRFPYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRD |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2015-05-26 Deposition Author(s): Agosto, M.A. , Baehr, W. , Baker, M.L. , Constantine, R. , He, F. , Schmid, M.F. , Wensel, T.G. , Zhang, Z.