Cryo-em reconstruction of quasi-hpv16 complex with h16.1a fab
PDB DOI: 10.2210/pdb3j8z/pdb
Classification: VIRUS/IMMUNE SYSTEM Organism(s): Human Papillomavirus Type 16 , Mus Musculus
Deposited: 2014-11-20 Deposition Author(s): Guan, J. , Hafenstein, S.
Method: ELECTRON MICROSCOPY Resolution: 14.0 Å
Cryo-em reconstruction of quasi-hpv16 complex with h16.1a fab
Primary Citation of Related Structures: 3J8Z
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
L1 | A | 455 | Human Papillomavirus Type 16 , Mus Musculus | AVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGL |
L1 | B | 455 | Human Papillomavirus Type 16 , Mus Musculus | AVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGL |
L1 | C | 455 | Human Papillomavirus Type 16 , Mus Musculus | AVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGL |
L1 | D | 455 | Human Papillomavirus Type 16 , Mus Musculus | AVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGL |
L1 | E | 455 | Human Papillomavirus Type 16 , Mus Musculus | AVVSTDEYVARTNIYYHAGTSRLLAVGHPYFPIKKPNNNKILVPKVSGLQYRVFRIHLPDPNKFGFPDTSFYNPDTQRLVWACVGVEVGRGQPLGVGISGHPLLNKLDDTENASAYAANAGVDNRECISMDYKQTQLCLIGCKPPIGEHWGKGSPCTQVAVQPGDCPPLELINTVIQDGDMVDTGFGAMDFTTLQANKSEVPLDICTSICKYPDYIKMVSEPYGDSLFFYLRREQMFVRHLFNRAGTVGENVPDDLYIKGSGSTANLASSNYFPTPSGSMVTSDAQIFNKPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMSLCAAISTSETTYKNTNFKEYLRHGEEYDLQFIFQLCKITLTADVMTYIHSMNSTILEDWNFGLQPPPGGTLEDTYRFVTSQAIACQKHTPPAPKEDPLKKYTFWEVNLKEKFSADLDQFPLGRKFLLQLGL |
H16.1A light chain | L | 115 | Human Papillomavirus Type 16 , Mus Musculus | DIVMTQSPSSLAMSAGQKVTMSCKSSQSLFDSRNQKNYLAWYQQKPGQSPTLLVYFASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLADYFCQQHYSTPYTFGGGTKLEIKRA |
H16.1A light chain | J | 115 | Human Papillomavirus Type 16 , Mus Musculus | DIVMTQSPSSLAMSAGQKVTMSCKSSQSLFDSRNQKNYLAWYQQKPGQSPTLLVYFASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLADYFCQQHYSTPYTFGGGTKLEIKRA |
H16.1A light chain | K | 115 | Human Papillomavirus Type 16 , Mus Musculus | DIVMTQSPSSLAMSAGQKVTMSCKSSQSLFDSRNQKNYLAWYQQKPGQSPTLLVYFASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLADYFCQQHYSTPYTFGGGTKLEIKRA |
H16.1A light chain | M | 115 | Human Papillomavirus Type 16 , Mus Musculus | DIVMTQSPSSLAMSAGQKVTMSCKSSQSLFDSRNQKNYLAWYQQKPGQSPTLLVYFASTRESGVPDRFIGSGSGTDFTLTISSVQAEDLADYFCQQHYSTPYTFGGGTKLEIKRA |
H16.1A heavy chain | H | 114 | Human Papillomavirus Type 16 , Mus Musculus | SGAELARPGASVKLSCKASGYTFTSYWMQWVKQRPGQGLEWIGAIYPGDGYTRYTQKFKGMATLTADKSSSTAYMQLTSLASEDSAVYYCARTYAGYYVGYFDYWGQGTTLTVS |
H16.1A heavy chain | F | 114 | Human Papillomavirus Type 16 , Mus Musculus | SGAELARPGASVKLSCKASGYTFTSYWMQWVKQRPGQGLEWIGAIYPGDGYTRYTQKFKGMATLTADKSSSTAYMQLTSLASEDSAVYYCARTYAGYYVGYFDYWGQGTTLTVS |
H16.1A heavy chain | G | 114 | Human Papillomavirus Type 16 , Mus Musculus | SGAELARPGASVKLSCKASGYTFTSYWMQWVKQRPGQGLEWIGAIYPGDGYTRYTQKFKGMATLTADKSSSTAYMQLTSLASEDSAVYYCARTYAGYYVGYFDYWGQGTTLTVS |
H16.1A heavy chain | I | 114 | Human Papillomavirus Type 16 , Mus Musculus | SGAELARPGASVKLSCKASGYTFTSYWMQWVKQRPGQGLEWIGAIYPGDGYTRYTQKFKGMATLTADKSSSTAYMQLTSLASEDSAVYYCARTYAGYYVGYFDYWGQGTTLTVS |
Method: ELECTRON MICROSCOPY
Deposited Date: 2014-11-20 Deposition Author(s): Guan, J. , Hafenstein, S.