3J8D
Cryoelectron microscopy of dengue-fab e104 complex at ph 5.5
PDB DOI: 10.2210/pdb3j8d/pdb
Classification: VIRUS/IMMUNE SYSTEM Organism(s): Dengue Virus 2 Thailand/16681/84 , Mus Musculus
Deposited: 2014-10-13 Deposition Author(s): Austin, S.K. , Diamond, M.S. , Hoornweg, T. , Kuhn, R.J. , Rossmann, M.G. , Sheng, J. , Smit, J.M. , Zhang, X.Z.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 26.0 Å
Cryoelectron microscopy of dengue-fab e104 complex at ph 5.5
Austin, S.K. , Diamond, M.S. , Hoornweg, T. , Kuhn, R.J. , Rossmann, M.G. , Sheng, J. , Smit, J.M. , Zhang, X.Z.
Primary Citation of Related Structures: 3J8D
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| glycoprotein DIII | B | 97 | Dengue Virus 2 Thailand/16681/84 , Mus Musculus | YVMCTGSFKLEKEVAETQHGTVLVQVKYEGTDAPCKIPFSSQDEKGVTQNGRLITANPIVTDKEKPVNIEAEPPFGESYIVVGAGEKALKLSWFKKG |
| glycoprotein DIII | F | 97 | Dengue Virus 2 Thailand/16681/84 , Mus Musculus | YVMCTGSFKLEKEVAETQHGTVLVQVKYEGTDAPCKIPFSSQDEKGVTQNGRLITANPIVTDKEKPVNIEAEPPFGESYIVVGAGEKALKLSWFKKG |
| antibody E111 Fab fragment | A | 425 | Dengue Virus 2 Thailand/16681/84 , Mus Musculus | NIVLTQSPASLAVSLGQRATISCRASESVDSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSVETDDAATYYCQQNNEDPYTFGGGTKLEIKQVQLLQPGAELVKPGASMKLSCKASGYTFTNWWMHWVRLRPGRGLEWIGRIDPNSDVNKYNEKFENRASLTVDKHSSTAYMQLTSEDSAIYYCARWFFPWYFDVWGTGTTVTVSRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRSAKTTAPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPALLQSGLYTLSSSVTVTSNTWPSQTITCNVAHPASSTKVDKKIES |
| antibody E111 Fab fragment | D | 425 | Dengue Virus 2 Thailand/16681/84 , Mus Musculus | NIVLTQSPASLAVSLGQRATISCRASESVDSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSVETDDAATYYCQQNNEDPYTFGGGTKLEIKQVQLLQPGAELVKPGASMKLSCKASGYTFTNWWMHWVRLRPGRGLEWIGRIDPNSDVNKYNEKFENRASLTVDKHSSTAYMQLTSEDSAIYYCARWFFPWYFDVWGTGTTVTVSRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRSAKTTAPSVYPLAPVCGGTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPALLQSGLYTLSSSVTVTSNTWPSQTITCNVAHPASSTKVDKKIES |
| Envelope protein E | G | 394 | Dengue Virus 2 Thailand/16681/84 , Mus Musculus | MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPTLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFTCKKNMEGKIVQPENLEYTVVITPHSGEEHAVGNDTGKHGKEVKITPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMKDKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIIGVEPGQLKLNWFKK |
| Envelope protein E | H | 394 | Dengue Virus 2 Thailand/16681/84 , Mus Musculus | MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPTLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFTCKKNMEGKIVQPENLEYTVVITPHSGEEHAVGNDTGKHGKEVKITPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMKDKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIIGVEPGQLKLNWFKK |
| Envelope protein E | I | 394 | Dengue Virus 2 Thailand/16681/84 , Mus Musculus | MRCIGISNRDFVEGVSGGSWVDIVLEHGSCVTTMAKNKPTLDFELIKTEAKQPATLRKYCIEAKLTNTTTESRCPTQGEPTLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFTCKKNMEGKIVQPENLEYTVVITPHSGEEHAVGNDTGKHGKEVKITPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMKDKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIIGVEPGQLKLNWFKK |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2014-10-13 Deposition Author(s): Austin, S.K. , Diamond, M.S. , Hoornweg, T. , Kuhn, R.J. , Rossmann, M.G. , Sheng, J. , Smit, J.M. , Zhang, X.Z.